View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20016_low_25 (Length: 371)
Name: NF20016_low_25
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 817668 - 818013
Alignment:
| Q |
17 |
cactaacaacaaatgtaatgtatgttctggttactgtgaggtaataaagtttgccgactaagcgtcgatatctcccagggtctttcaatggctccccctg |
116 |
Q |
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||||||||||||||||||||| || ||| |||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||| ||| |
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| T |
817668 |
cactaacaacaaatgtaatgtctggtctagttactgtgaggtaattaagtttgccgactagacgtcgatatctgccagggtctttcagtggctcccgctg |
817767 |
T |
|
| Q |
117 |
acctggtagtaacttgacgttaggatccagaggagtgtcactaggtcggaaatcaagcaagccaatttcctcaagtatatcaagagcatattttcgctaa |
216 |
Q |
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||||||||||||||| ||||| ||||||| ||||||||||||||||||| || ||||||| ||| |||||||||| ||||||||||||||| |||| | | |
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| T |
817768 |
acctggtagtaacttaacgttgggatccataggagtgtcactaggtcggcaagcaagcaaaccagtttcctcaagaatatcaagagcatatcttcgttga |
817867 |
T |
|
| Q |
217 |
gtaatagccgcaccagtcttggaccgagcaacttcaatccccaagaaatattttagtggtcccaaatctttagtttgaaagtgaagggataaatgttgtt |
316 |
Q |
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||||||||| | |||||||||||| ||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
817868 |
gtaatagccactccagtcttggactgagcaacttcaatccccaagaaatagttcagtggacccaaatctttagtttgaaagtgaagggatagatgttgtt |
817967 |
T |
|
| Q |
317 |
tcaattgttggatgccagcctcatcattaccagtgatgatgatgtc |
362 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
817968 |
tcaattgttggatgccagccttatcattaccagtgatgatgatgtc |
818013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 317
Target Start/End: Complemental strand, 3054696 - 3054558
Alignment:
| Q |
178 |
ccaatttcctcaagtatatcaagagcatattttcgctaagtaatagccgcaccagtcttggaccgagcaacttcaatccccaagaaatattttagtggtc |
277 |
Q |
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|||||||||||||| || ||| ||||||||||| | | |||||||||| |||| |||| ||| ||||||||||| | ||| ||| ||||| |||| | |
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| T |
3054696 |
ccaatttcctcaagaatgtcaggagcatatttttgatgagtaatagccacacctatcttagactaagcaacttcaacctgcaa-aaaaattttggtggcc |
3054598 |
T |
|
| Q |
278 |
ccaaatctttagtttgaaagtgaagggataaatgttgttt |
317 |
Q |
| |
|
||||||||| ||| |||||||| || || ||||||||||| |
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| T |
3054597 |
ccaaatcttgagtctgaaagtgtagagacaaatgttgttt |
3054558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 20592668 - 20592982
Alignment:
| Q |
17 |
cactaacaacaaatgtaatgtatgttctggttactgtgaggtaataaagtttgccgactaagcgtcgatatctcccagggtctttcaatggctccccctg |
116 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||||||| |||||| |||||||| ||||| ||||||||||| ||||||||||||| |||||||||||| |
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| T |
20592668 |
cactaacaacaaatgtaatgtctggtctagttactgtggggtaattaagtttgctgactagacgtcgatatctgccagggtctttcagtggctccccctg |
20592767 |
T |
|
| Q |
117 |
acctggtagtaacttgacgttaggatccagaggagtgtcactaggtcggaaatcaagcaagccaatttcctcaagtatatcaagagcatattttcgctaa |
216 |
Q |
| |
|
||||||||||||||||||||| ||||||| || |||||||||||||||| |||||||||| | | |||||||||| ||||||||||||||| |||||| | |
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|
| T |
20592768 |
acctggtagtaacttgacgttgggatccatagaagtgtcactaggtcggcaatcaagcaaactagtttcctcaagaatatcaagagcatatcttcgctga |
20592867 |
T |
|
| Q |
217 |
gtaatagccgcaccagtcttggaccgagcaacttcaatccccaagaaatattttagtggtcccaaatctttagtttgaaagtgaagggataaatgttgtt |
316 |
Q |
| |
|
||||||||| | |||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
20592868 |
gtaatagccactccagtcttggactgagcaacttcaatccctaagaaatatttcagtggacccaaatctttagtttgaaagtgaagggatagatgttgtt |
20592967 |
T |
|
| Q |
317 |
tcaattgttggatgc |
331 |
Q |
| |
|
|||| |||||||||| |
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|
| T |
20592968 |
tcaactgttggatgc |
20592982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 362
Target Start/End: Original strand, 22161086 - 22161428
Alignment:
| Q |
20 |
taacaacaaatgtaatgtatgttctggttactgtgaggtaataaagtttgccgactaagcgtcgatatctcccagggtctttcaatggctccccctgacc |
119 |
Q |
| |
|
|||||| ||||||||||| | ||| |||||||||||| ||| |||||||||||||| ||||||||||| || |||||||||| ||||||||||||||| |
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|
| T |
22161086 |
taacaagaaatgtaatgtcttgtctagttactgtgaggaaattaagtttgccgactagacgtcgatatctgcctgggtctttcagtggctccccctgacc |
22161185 |
T |
|
| Q |
120 |
tggtagtaacttgacgttaggatccagaggagtgtcactaggtcggaaatcaagcaagccaatttcctcaagtatatcaagagcatattttcgctaagta |
219 |
Q |
| |
|
|||||||||||||||||| ||||||| || |||||||||||||||| |||||||||| ||| |||||||||| ||||||| ||||||| |||||| |||| |
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|
| T |
22161186 |
tggtagtaacttgacgttgggatccatagaagtgtcactaggtcggcaatcaagcaaaccagtttcctcaagaatatcaaaagcatatcttcgctgagta |
22161285 |
T |
|
| Q |
220 |
atagccgcaccagtcttggaccgagcaacttcaatccccaagaaatattttagtggtcccaaatctttagtttgaaagtgaagggataaatgttgtttca |
319 |
Q |
| |
|
|||||| | |||||||| ||| || ||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
22161286 |
atagccactccagtcttagactgaacaacttcaatccccaagaaatatttcagtggacccaaatctttagtttgaaactgaagggatagatgttgtttca |
22161385 |
T |
|
| Q |
320 |
attgttggatgccagcctcatcattaccagtgatgatgatgtc |
362 |
Q |
| |
|
| ||||||||| |||||| |||||||||| |||||||||||| |
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| T |
22161386 |
actgttggatgtcagccttatcattaccaaagatgatgatgtc |
22161428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 42 - 362
Target Start/End: Original strand, 24181831 - 24182151
Alignment:
| Q |
42 |
tctggttactgtgaggtaataaagtttgccgactaagcgtcgatatctcccagggtctttcaatggctccccctgacctggtagtaacttgacgttagga |
141 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||| | |||||| | | | |||||| |||||||||||| ||| ||| |||||||||||| || ||| |
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| T |
24181831 |
tctggttagtatgaggtaattaagtttgccgactagactccgatatttgctaaggtcttccaatggctcccc-tgatctgatagtaacttgacattggga |
24181929 |
T |
|
| Q |
142 |
tccagaggagtgtcactaggtcggaaatcaagcaagccaatttcctcaagtatatcaagagcatattttcgctaagtaatagccgcaccagtctt-ggac |
240 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||||| ||||||||||||||||| |||||||||| |||||| || ||||||| ||| |||| |||| |
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|
| T |
24181930 |
tccataggagtgacactaggtcgacaatcaagcaagcaaatttcctcaagtatattaagagcatatcttcgctgagcaatagccacacatatctttggac |
24182029 |
T |
|
| Q |
241 |
cgagcaacttcaatccccaagaaatattttagtggtcccaaatctttagtttgaaagtgaagggataaatgttgtttcaattgttggatgccagcctcat |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| | ||||||| || ||||||||||||| || || |
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|
| T |
24182030 |
tgagcaacttcaatccccaagaaatattttagtggtcctaaatctttagtttaaaagtgaaatgatagacgttgttttaactgttggatgccagtcttat |
24182129 |
T |
|
| Q |
341 |
cattaccagtgatgatgatgtc |
362 |
Q |
| |
|
||||||||||||||||| |||| |
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| T |
24182130 |
cattaccagtgatgatgttgtc |
24182151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 235
Target Start/End: Complemental strand, 30665967 - 30665813
Alignment:
| Q |
85 |
tatctcccagggtctttcaatggctccccctgacctggtagtaacttgacgttaggatccagaggagtgtcactaggtcggaaatcaagcaagccaattt |
184 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||| ||| |
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|
| T |
30665967 |
tatctgccagggtctttcagtggctccccctgacttggcagtaacttgacgttgggatccataggagtgtcactaggtcggcaatcaagcaagccagttt |
30665868 |
T |
|
| Q |
185 |
cctcaag----tatatcaagagcatattttcgctaagtaatagccgcaccagtct |
235 |
Q |
| |
|
| ||||| | ||||||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
30665867 |
cttcaagtgtatctatcaagagcatattttcgctgagtaatagccacaccagtct |
30665813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 43 - 201
Target Start/End: Complemental strand, 34611235 - 34611077
Alignment:
| Q |
43 |
ctggttactgtgaggtaataaagtttgccgactaagcgtcgatatctcccagggtctttcaatggctccccctgacctggtagtaacttgacgttaggat |
142 |
Q |
| |
|
||||| ||||||||||||| |||||| || |||| ||||||||| |||||||| ||||| |||||||| |||||| |||||| | |||| || |||| |
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|
| T |
34611235 |
ctggtcactgtgaggtaattaagttttccaactagacgtcgatattgaccagggtcgttcaaaggctccccttgacctagtagtagcctgaccttgggat |
34611136 |
T |
|
| Q |
143 |
ccagaggagtgtcactaggtcggaaatcaagcaagccaatttcctcaagtatatcaaga |
201 |
Q |
| |
|
||| |||||||||||| |||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
34611135 |
ccataggagtgtcactgggtcaacaatcaagcaagccagtttcctcaagtatatcaaga |
34611077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 21501050 - 21501116
Alignment:
| Q |
67 |
ttgccgactaagcgtcgatatctcccagggtctttcaatggctccccctgacctggtagtaacttga |
133 |
Q |
| |
|
|||||||| || |||||||| || ||||||||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
21501050 |
ttgccgacaaaacgtcgataactgccagggtctttcagtggttccccctgacctggtagtaacttga |
21501116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 9187632 - 9187550
Alignment:
| Q |
79 |
cgtcgatatctcccagggtctttcaatggctccccctgacctggtagtaacttgacgttaggatccagaggagtgtcactagg |
161 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||| ||| || || | |||||| || ||||||| | |||||||| |||| |
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|
| T |
9187632 |
cgtcgatatcttcccgggtctttcaatggctccccctaacccggaagaagcttgacatttggatccatatgagtgtcaatagg |
9187550 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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