View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_low_27 (Length: 369)
Name: NF20016_low_27
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 5479452 - 5479817
Alignment:
| Q |
1 |
gatttcatggcgcatggaactttacgtgatcatctttataatactgagaatcctgctttatcgtggaaacaaaggttgcaaatttcaatcggagcggcac |
100 |
Q |
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| T |
5479452 |
gatttcatggcgcatggaactttacgtgatcatctttataatactgagaatcctgctttatcgtggaaacaaaggttgcaaatttcaattggagcggcac |
5479551 |
T |
|
| Q |
101 |
gtgggttacactaccttcataccggtgcaaagaacatgattattcaccgtgatgtgaaaaccacaaatattctgttagatgataaatggatagcaaaggt |
200 |
Q |
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| T |
5479552 |
gtgggttacactaccttcatactggtgcaaagaacatgattattcaccgtgacgtgaaaacgacaaatattctgttagatgataaatggatagcaaaggt |
5479651 |
T |
|
| Q |
201 |
ttccgattttgggctttcgaggattgggcctatgggtatttcgaaagcccatgttagtacggttgttaaagggagtgttgggtatttagacccggagtat |
300 |
Q |
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| T |
5479652 |
ttccgattttgggctttcgaggattgggcctatgggtatttcaaaagcccatgttagtacggttgttaaagggagtgttgggtatttagacccggagtat |
5479751 |
T |
|
| Q |
301 |
tataaacgtcagcgtttgactgagaaatctgatgtttattcttttggtgttgttttgtttgagata |
366 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
5479752 |
tataaacgtcagcgtttgaccgagaaatctgatgtttactcttttggtgttgttttgttcgagata |
5479817 |
T |
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