View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_low_3 (Length: 589)
Name: NF20016_low_3
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 14 - 582
Target Start/End: Original strand, 5298891 - 5299468
Alignment:
| Q |
14 |
atgaagttgattgtttatgataaattaagaagtagttgtgtaatacatttactcacaacgacagtgaccatttacattgcatcttttattgtgtaaaata |
113 |
Q |
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| T |
5298891 |
atgaagttgattgtttatgataaattaagaagtagttgtgtaatacatt-actcacaacgacagtgaccatttacattgcatcttttattgtgtaaaata |
5298989 |
T |
|
| Q |
114 |
cattgaaattatagtagatacattctataattttgtgacatcatggtgaccactgaatcttggcttatgtgaccttttgtaaaaccaatcgcggttgtaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5298990 |
cattgaaattatagtagatacattctataattttgtgacatcatggtgaccactaaatcttggcttatgtaaccttttgtaaaaccaatcgcggttgtaa |
5299089 |
T |
|
| Q |
214 |
ctcattaatccacacaatagtgtgatataacc----ccaaagcttcgccaacttccaccgagcataagggtgtaatccatagaattttagacagcacata |
309 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5299090 |
ctcattaatccacacaatagtgtgatataaccaaccccaaagcttcgccaacttccaccgagcataagggtgtaatccatagaattttagacagcacata |
5299189 |
T |
|
| Q |
310 |
acactcttcctcatctcaaatacacatacctatccctactctatcgagggatgttgagaatgacgcatcaatattacattttagcctccccattgctggt |
409 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5299190 |
acacccttcctcatctcaaatacacatacctatccctactctatcgagggatgttgagaatgacgcatcaatattacattttagcctccccattgctggt |
5299289 |
T |
|
| Q |
410 |
taccgccatctttgctctgctgttctgctagtctgctgttgcgttattggtgctactattatgccttgtaccagca------gaattttgaagtctgcgc |
503 |
Q |
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| T |
5299290 |
taccgccatctttgctctgcagttctgctagtctgctgttgcgttattgctgctactattattccttgtaccagcagcgtgtgcattttgaagtctgcgc |
5299389 |
T |
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| Q |
504 |
ataacgcaaatcctccaataagtatttcgcacgctccagaaagctgctagtttgctgccaaattctgagatctctgctc |
582 |
Q |
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| T |
5299390 |
ataacgccaatcctccaataagtgtttcgcgcgctccagaaagctgctagtttgctgccaaattctgagatttctgctc |
5299468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 215 - 436
Target Start/End: Complemental strand, 34274241 - 34274020
Alignment:
| Q |
215 |
tcattaatccacacaatagtgtgatataaccccaaagcttcgccaacttccaccgagcataagggtgtaatccatagaattttagacagcacataacact |
314 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||| ||| || |||||||| ||||||| |||| |||| ||||||||||| || | |
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| T |
34274241 |
tcattaatccacaacatagtgtgatatggtcccaaagcttcgccaactttcacagaacataagggagtaatccgtagagttttggacagcacataccatt |
34274142 |
T |
|
| Q |
315 |
cttcctcatctcaaatacacatacctatccctactctatcgagggatgttgagaatgacgcatcaatattacattttagcctccccattgctggttaccg |
414 |
Q |
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|||||||||||| |||||||||| ||||||| |||||| | ||||||||||||| || |||||| || |||||||| ||||| |||| ||| || |
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| T |
34274141 |
cttcctcatctcgaatacacatatctatcccagctctattgcgggatgttgagaaggaatcatcaacataacattttaacctccaacttgcccgttttcg |
34274042 |
T |
|
| Q |
415 |
ccatctttgctctgctgttctg |
436 |
Q |
| |
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|| |||||| |||||||||||| |
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| T |
34274041 |
ccttctttgttctgctgttctg |
34274020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 236 - 338
Target Start/End: Original strand, 8860377 - 8860479
Alignment:
| Q |
236 |
tgatataaccccaaagcttcgccaacttccaccgagcataagggtgtaatccatagaattttagacagcacataacactcttcctcatctcaaatacaca |
335 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||| ||||||| ||||||||| |||||||||| ||||| |||||| |||||||| |
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| T |
8860377 |
tgatataaccccaaagcttcgccaacttccacgtagcataaaagtgtaagccatagagttttagacaacacataacacccttccacatctcgaatacaca |
8860476 |
T |
|
| Q |
336 |
tac |
338 |
Q |
| |
|
||| |
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|
| T |
8860477 |
tac |
8860479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 322 - 444
Target Start/End: Original strand, 8860495 - 8860616
Alignment:
| Q |
322 |
atctcaaatacacatacctatccctactctatcgagggatgttgagaatgacgcatcaatattacattttagcctccccattgctggttaccgccatctt |
421 |
Q |
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||||| ||||||||||| |||||||||||||| || |||||||||||||||| |||||| ||||||||| ||| |||| | |||||||| | ||||||| |
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| T |
8860495 |
atctcgaatacacatacttatccctactctattgatggatgttgagaatgacacatcaacattacatttaagcttcccaaatgctggtt-tctccatctt |
8860593 |
T |
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| Q |
422 |
tgctctgctgttctgctagtctg |
444 |
Q |
| |
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|| |||||||||||| ||||||| |
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| T |
8860594 |
tgttctgctgttctgttagtctg |
8860616 |
T |
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