View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_low_30 (Length: 353)
Name: NF20016_low_30
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 10887413 - 10887735
Alignment:
| Q |
16 |
tactagactcgaggtgcttagtgcagcgtactgtgaggagctggtagaaatattttcgaaggatgaaatacctgcagaaggagaaataaaagagtttcct |
115 |
Q |
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| T |
10887413 |
tactagactcaaggtgcttagtgcaacgaactgtgaggagctggtagaaatattttcgaaggatgaaatacctgcagaaggagaaataaaagagtttcct |
10887512 |
T |
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| Q |
116 |
caactgaccacaatgcgcctaataaaattgccaaggctcaaatacttttatcctcgtctacataagctagaatggcctgcactaaaagagctgtatgcac |
215 |
Q |
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| T |
10887513 |
caactgaccacaatgcacctaataaacttgccaaggctcaaatacttttatcctcgtctacataagctagaatggcctgcactaaaagagctgcatgcac |
10887612 |
T |
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| Q |
216 |
atcattgtaacttgacgatactcaaatgtcgagaagatcatccagaggaccaagcccttattccaattgaaaaggtacttcatacaacttggtctatcag |
315 |
Q |
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| T |
10887613 |
atccttgtaacttgacgatactcaaatgtcgagaagatcatccagaggaccaagcccttattccaattgaaaaggtacttcatacaacttggtgtataag |
10887712 |
T |
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| Q |
316 |
gcagttaaaaacagtttcacgtg |
338 |
Q |
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| T |
10887713 |
gcagttaaaaacagtttcacgtg |
10887735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 57 - 292
Target Start/End: Original strand, 10855296 - 10855537
Alignment:
| Q |
57 |
tggtagaaatattttcgaaggatgaaatacctgcagaaggagaaataaaagagtt------tcctcaactgaccacaatgcgcctaataaaattgccaag |
150 |
Q |
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| T |
10855296 |
tggtagaaatattttcagaggatgaaatacctgcagaaggagcaacaaaagagttaatgtttccttctctgacctcattgtacataataaaattgccagc |
10855395 |
T |
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| Q |
151 |
gctcaaatacttttatcctcgtctacataagctagaatggcctgcactaaaagagctgtatgcacatcattgtaacttgacgatactcaaatgtcgagaa |
250 |
Q |
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| T |
10855396 |
gctcaaatacttttatcgtggtttacataagctagaatggcccatgctaaaagaattgcatgcatatcggtgtaacttagtgatactcgaatgtcaagaa |
10855495 |
T |
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| Q |
251 |
gatcatccagaggaccaagcccttattccaattgaaaaggta |
292 |
Q |
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| T |
10855496 |
gatcatccagaggagcaagcccttgttccagttgaaaaggta |
10855537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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