View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_low_34 (Length: 329)
Name: NF20016_low_34
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 54905257 - 54905578
Alignment:
| Q |
1 |
gctcttaagctcttccattcggatcggtttcactagatagttgcaagcaccgtgtataacactcttcatcaccttctctatatcatcatttactgacaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54905257 |
gctcttaagctcttccattcggatcggtttcactagatagttgcaagcaccgtgtataacactcttcatcaccttctctatatcatcatttactgacaac |
54905356 |
T |
|
| Q |
101 |
actatatatcacacacaaaaaatcgtcacttagatactatctgaataaaagaagtgtatataaattaggtaaacaatacagattttaagacaaaggtgtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| || | |||||||||||||||||||||||||||||||||||||| |
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| T |
54905357 |
actatatatcacacacaaaaaatcgtcacttagatacaatctgaatataagaagtggatcttaattaggtaaacaatacagattttaagacaaaggtgtg |
54905456 |
T |
|
| Q |
201 |
tgagcttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54905457 |
tgagcttactgatgaaaggtaaatccatttcaagtccaacttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtc |
54905556 |
T |
|
| Q |
301 |
aaacatatccttcttctctctc |
322 |
Q |
| |
|
||||||||||||||| |||||| |
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|
| T |
54905557 |
aaacatatccttcttttctctc |
54905578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 3 - 309
Target Start/End: Original strand, 54889209 - 54889516
Alignment:
| Q |
3 |
tcttaagctcttccattcggatcggtttcactagatagttgcaagcaccgtgtataacactcttcatcaccttctctatatcatcatttactgacaacac |
102 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||| |||||| || | || |||| ||||||||| ||||| ||||||||||| |||||||||| |
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|
| T |
54889209 |
tcttaagctcttccaatcggattggtttcactagatagtcgcaagcgcctttcatcacacctttcatcaccctctctctatcatcatttcctgacaacac |
54889308 |
T |
|
| Q |
103 |
tatatatcacacacaaaaaatcgtcactta--gatactatctgaataaaagaagtgtatataaattaggtaaacaatacagattttaagacaaaggtgtg |
200 |
Q |
| |
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||||| |||| | |||||||| ||||||| || |||||||||||| |||||||| || | | |||| | || |||| | || ||| |||||||| || |
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| T |
54889309 |
tatatcacacaaa-aaaaaatcatcacttaaagacactatctgaatataagaagtgaatcttagttagctgaataataaacatgctaaaacaaaggtatg |
54889407 |
T |
|
| Q |
201 |
tgagcttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtc |
300 |
Q |
| |
|
|||||||||||||||| |||| || |||||||||||| ||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| |
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| T |
54889408 |
tgagcttactgatgaagggtaggtctatttcaagtccaacttgctcaaggagcttgaatccatccatttctggcatgcttacatcactaattacaaggtc |
54889507 |
T |
|
| Q |
301 |
aaacatatc |
309 |
Q |
| |
|
||||||||| |
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|
| T |
54889508 |
aaacatatc |
54889516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 3 - 306
Target Start/End: Original strand, 54894821 - 54895136
Alignment:
| Q |
3 |
tcttaagctcttccattcggatcggtttcactagatagttgcaagcaccgtgtataacactcttcatcaccttctctatatcatcatttactgacaacac |
102 |
Q |
| |
|
|||||||||| |||| |||||||||||| |||||||||| |||||| || | || |||| ||||||||| | ||| ||||||||| | |||||||||| |
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|
| T |
54894821 |
tcttaagctcctccaatcggatcggtttgactagatagtcgcaagcgcctttcatcacacctttcatcaccctttctctatcatcatgtcctgacaacac |
54894920 |
T |
|
| Q |
103 |
tatatatcac------acacaaaaaatcgtcactta--gatactatctgaataaaagaagtgtatataaattaggtaaacaatacagattttaagacaa- |
193 |
Q |
| |
|
||||| ||| | | |||||||| ||||||| ||| |||| |||||| |||||||| || | |||||| | || |||||| || ||||||||| |
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| T |
54894921 |
tatatcacaccaatagaaaaaaaaaatcatcacttaaagattctatatgaatataagaagtggatcttaattagctgaataatacacatgttaagacaat |
54895020 |
T |
|
| Q |
194 |
---aggtgtgtgagcttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaa |
290 |
Q |
| |
|
|||| ||| |||||||| |||||||| | ||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||| | |||||||||| |
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|
| T |
54895021 |
ttaaggtttgttagcttactaatgaaaggcaggtccatctcaagtccaacttgctcaaggagcttgaaaccatccatttctggcatgtttacatcactaa |
54895120 |
T |
|
| Q |
291 |
ttactaggtcaaacat |
306 |
Q |
| |
|
||| || |||||||| |
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|
| T |
54895121 |
ttataagatcaaacat |
54895136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 303
Target Start/End: Complemental strand, 2888631 - 2888533
Alignment:
| Q |
205 |
cttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaa |
303 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||||| | ||||||| ||||| || ||||||||||||||||| ||||| || |||||||||||||| |
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|
| T |
2888631 |
cttacttatgacaggtaaatccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattgctgattactaggtcaaa |
2888533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 303
Target Start/End: Complemental strand, 2904734 - 2904636
Alignment:
| Q |
205 |
cttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaa |
303 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||| | ||||||| ||||| || ||||||||||||||||| ||||| || |||||||||||||| |
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|
| T |
2904734 |
cttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattgctgattactaggtcaaa |
2904636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 303
Target Start/End: Complemental strand, 2893226 - 2893128
Alignment:
| Q |
205 |
cttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaa |
303 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||| | ||||||| ||||| || || |||||||||||||| ||||| || |||||||||||||| |
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|
| T |
2893226 |
cttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccgtccatgtctggcatatgaacattgctgattactaggtcaaa |
2893128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 48870467 - 48870546
Alignment:
| Q |
224 |
tccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaa |
303 |
Q |
| |
|
||||| ||||||||| | ||||||| ||||| || ||||||||||||||||| ||||| ||| |||||||||||||| |
|
|
| T |
48870467 |
tccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattactgattactaggtcaaa |
48870546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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