View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_low_36 (Length: 318)
Name: NF20016_low_36
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 29967582 - 29967738
Alignment:
| Q |
11 |
gaagaatatgagcccagagttcgttatcggagacgagagatcgccatgacttgcaaacgaggcagagtttggcagcatgtttagggcttaatagtcttgt |
110 |
Q |
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| T |
29967582 |
gaagaaaatgagcccagagttcgttatcggagacgagagatcgccatgacttgcaaacgaggcagagtttggcagcatgtttagggcctaatagtcttgt |
29967681 |
T |
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| Q |
111 |
gattttgaggagtatttcaggagggagtgagtcaaataaacccaaaggactcggagc |
167 |
Q |
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| T |
29967682 |
gattttgaggagtatgtcaggagggagtgagtcaaataaacccaaaggactcggagc |
29967738 |
T |
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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 29967798 - 29967835
Alignment:
| Q |
263 |
atcgtttaatcgatgatgatgctgaatcgcatagtttt |
300 |
Q |
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| T |
29967798 |
atcgtttaatcgatgatgatgctgaatcgcatagtttt |
29967835 |
T |
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