View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_low_37 (Length: 301)
Name: NF20016_low_37
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_37 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 40511690 - 40511976
Alignment:
| Q |
17 |
attatcgagccccttgatataaacctggacaaggacataggttcaaagacaagatgttgatggtgcggtctaagttggttagaaatat--atcaagaaat |
114 |
Q |
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| T |
40511690 |
attatcgagccccttgatataaacccggacaaggacataggttcaaagacaaggtgttgatgttgcggtctaagttggttagaaatatatatcaagaaat |
40511789 |
T |
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| Q |
115 |
gtttgcattttcacacagacaaggctgatcaagtaattgggtgtggtatgaataagtctaaatgtggttgctgaattttcatcctacatggattgtcgtg |
214 |
Q |
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| T |
40511790 |
gtttgcattttcacgcagacaaggctgatcaaacaattgggtgtggtatggataagtctaaatgtggttgtttaattttcatcctacatggattgtcgtg |
40511889 |
T |
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| Q |
215 |
tgcatgtacaattgccaagaaagtcaagttcaacactcccctctgtttagataaaattcactcatcagaagaggttgtagttcgagt |
301 |
Q |
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| T |
40511890 |
tgcatgtacacttgccaaaaaaatcaagttcaacactctcctcagtttagataaaattcactcatcaaaagaggttgtagttcgagt |
40511976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 235
Target Start/End: Complemental strand, 21196707 - 21196554
Alignment:
| Q |
83 |
ggtctaagttggttagaaatatatcaagaaa-tgtttgcattttcacacagacaaggctgatcaagtaattgggtgtggtatgaataagtctaaatgtgg |
181 |
Q |
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| T |
21196707 |
ggtctaagttgattagaaatgtattaaggaactctttgcattatctctcagacaaggttaatcgagtagtttagtgtagttcaaataagtctaaatgtgg |
21196608 |
T |
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| Q |
182 |
ttgctgaattttcatcctacatggattgtcgtgtgcatgtacaattgccaagaa |
235 |
Q |
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| T |
21196607 |
ttgcttaattttcatcacatatggattaccgtgtgcgtgtacaatttccaagaa |
21196554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 16041210 - 16041147
Alignment:
| Q |
134 |
caaggctgatcaagtaattgggtgtggtatgaataagtctaaatgtggttgctgaattttcatc |
197 |
Q |
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| T |
16041210 |
caaggttgatcgagcagttgggtgtggtatggataaatctaaatgtggttgcttaattttcatc |
16041147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 31179961 - 31180065
Alignment:
| Q |
146 |
agtaattgggtgtggtatgaataagtctaaatgtggttgctgaattttcatcctacatggattgtcgtgtgcatgtacaattgccaagaaagtcaagttc |
245 |
Q |
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| T |
31179961 |
agtagttgggtgtggtataaataaatataaatgttgttgcttaattttcatcatatactgattttcatgtgcgcggacaattgccaagaagatcaagctc |
31180060 |
T |
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| Q |
246 |
aacac |
250 |
Q |
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| T |
31180061 |
aacac |
31180065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 31179755 - 31179865
Alignment:
| Q |
87 |
taagttggttagaaatatatcaagaaatgtttg-cattttcacacagacaaggctgatcaagtaattgggtgtggtatgaataagtctaaatgtggttgc |
185 |
Q |
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| T |
31179755 |
taagttggttagaaacatattaaggaatgttttacattatcacgcaaacgaggttgatcaaaaaattgggtc-ggtatgaataaatttaaatgtggttgt |
31179853 |
T |
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| Q |
186 |
tgaattttcatc |
197 |
Q |
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| T |
31179854 |
ttaattttcatc |
31179865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 25010836 - 25010766
Alignment:
| Q |
165 |
aataagtctaaatgtggttgctgaattttcatcctacatggattgtcgtgtgcatgtacaattgccaagaa |
235 |
Q |
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| T |
25010836 |
aataagtttaaatgtggttgcttaattttcatcacatatggattactgtgtgcatgtacgattgctaagaa |
25010766 |
T |
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