View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20016_low_38 (Length: 297)
Name: NF20016_low_38
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_38 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 41298325 - 41298045
Alignment:
| Q |
1 |
gccatgggaacaagtgagagttgagactcggcagtaactacagcagctttaccagtgccttcctcaagtgttgtgttgtcttttttcttcttggcttgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41298325 |
gccatgggaacaagtgagagttgagactcggcagtaactacagcagctttaccagtgccttcctcaagtgttgtgttgtcttttttcttcttggcttgca |
41298226 |
T |
|
| Q |
101 |
gctcatgccaccattctggatacccatgtaacttgaaacatgtatcacgagtgtgtttgacatttccacaatgagtgcaccttcctccatcggacgaacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| |||||||| |
|
|
| T |
41298225 |
gctcatgccaccattctggatacccatgtaacttgaaacatgtatcacgagtgtgtctgacatttccacaatgagttcactttcctccatcagacgaacc |
41298126 |
T |
|
| Q |
201 |
cttcgactttgagaaaaagttgtttttcccagccaccagtgttggtaattcgccaaatattgaaccttttgtggccataac |
281 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
41298125 |
cttcgactttgagaaaaagttgttttttccagccaccagtgttggtaattggccaaactttgaaccttttgtggccataac |
41298045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 15668848 - 15668901
Alignment:
| Q |
102 |
ctcatgccaccattctggatacccatgtaacttgaaacatgtatcacgagtgtg |
155 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| ||||| ||||| ||||| |
|
|
| T |
15668848 |
ctcattccaccattctggatacccatgcaacttgaagcatgtgtcacgggtgtg |
15668901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 5864281 - 5864334
Alignment:
| Q |
102 |
ctcatgccaccattctggatacccatgtaacttgaaacatgtatcacgagtgtg |
155 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| ||||| ||||| ||||| |
|
|
| T |
5864281 |
ctcattccaccattctggatacccatgcaacttgaagcatgtgtcacgggtgtg |
5864334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 34171265 - 34171318
Alignment:
| Q |
102 |
ctcatgccaccattctggatacccatgtaacttgaaacatgtatcacgagtgtg |
155 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| ||||| ||||| ||||| |
|
|
| T |
34171265 |
ctcattccaccattctggatacccatgcaacttgaagcatgtgtcacgggtgtg |
34171318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 526026 - 526097
Alignment:
| Q |
108 |
ccaccattctggatacccatgtaacttgaaacatgtatcacgagtgtgtttgacatttccacaatgagtgca |
179 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || ||| | || || || | ||||||||||||||||| |
|
|
| T |
526026 |
ccaccattctgggtacccatgtaacttgaaacaagtttcatgtgtatgcttcaactttccacaatgagtgca |
526097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University