View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_low_39 (Length: 292)
Name: NF20016_low_39
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 6582392 - 6582665
Alignment:
| Q |
11 |
cataggttcgagtcactgcaagataaccataaactagttattgtttcacttcgacgtaaccggaatattagtcttatctagccccatcgtatatataacn |
110 |
Q |
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| T |
6582392 |
cataggttcgagtcactgcaagataaccataaactagttattgtttcactccgacgtaaccggaatattagtcttatctagccccatcgtataaataaca |
6582491 |
T |
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| Q |
111 |
nnnnnn--------tcaaatatacaccaaagagaatttcaggtgtgtccaacctggaggattgcaactacagtatgagcacttgtaggactatatgccat |
202 |
Q |
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| T |
6582492 |
aaaaaaacaaaaattcaaatatacaccaaagagaatttcaggtgtgtccaacctggaggattgcaaccacagtatgagcacttgtaggactatatgccat |
6582591 |
T |
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| Q |
203 |
gcggacaacaggtgcaccaatgtcaagagcagaaatcttgcttcctgtcaatgcgtcaaattctgcatgcatcg |
276 |
Q |
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| T |
6582592 |
gcggacaacaggtgcaccaatgtcaagagcagaaatcttgcttcctgtcaatgcgtcaaattctgcatgcatcg |
6582665 |
T |
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Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 150 - 274
Target Start/End: Complemental strand, 34237395 - 34237271
Alignment:
| Q |
150 |
ccaacctggaggattgcaactacagtatgagcacttgtaggactatatgccatgcggacaacaggtgcaccaatgtcaagagcagaaatcttgcttcctg |
249 |
Q |
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| T |
34237395 |
ccaacctggaggattgcaatcacagtgtgtccacttgttggactgtacgccattcgaacagcaggcgcgccaatgtcaagagcggaaatcttgcttccag |
34237296 |
T |
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| Q |
250 |
tcaatgcgtcaaattctgcatgcat |
274 |
Q |
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| T |
34237295 |
ttaatgcatcaaattctgcatgcat |
34237271 |
T |
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