View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_low_40 (Length: 290)
Name: NF20016_low_40
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 7530794 - 7530530
Alignment:
| Q |
16 |
aaaacaatggtacttcaatcagaaagaataaatggttggagtggaaatagcatctctaacctgtaacatttattatcacatgacaacccaaatggcctgt |
115 |
Q |
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| T |
7530794 |
aaaacaatagtacttcaatcagaaagaataaatggttggagtggaaattgcatctctaacctgtaacatttattatcacatgacaacccaaatggcctgt |
7530695 |
T |
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| Q |
116 |
gaacatcggtcatttttctcccataaacaatggccatataaatatagatcctaagaaccacaataaaatatctcttggatgaaaacaagaaaaataatta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7530694 |
gaacatcggtcatttttctcccataaacaatggccatataaatatagatcctaagaaccacaataaaatatctcttggatgaaaacaagaaaaataatta |
7530595 |
T |
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| Q |
216 |
attctgttgctcaaattgaaagaaggctttccttgtaaattaccatctgacaattccatcctttg |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7530594 |
attctgttgctcaaattgaaagaaggctttccttgtaaattaccatctgacaattccatcctttg |
7530530 |
T |
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