View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_low_41 (Length: 282)
Name: NF20016_low_41
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 53426549 - 53426302
Alignment:
| Q |
17 |
catcaaagctaagctcaatttaagagaatactaaacatgaaaggaaattcagttctattggtactaatattttactcactcttccttttccttggagagt |
116 |
Q |
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| T |
53426549 |
catcaaagctaagctcaatataagagaatactaaacatgaaaggaaattcagttctattggtactaatattttactcactcttccttttccttggagagt |
53426450 |
T |
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| Q |
117 |
caagatcatccttaactcctcaatcaaagaatgacaatcaagtttatattgtgtatatgggagctgcacattcagctaatggttcccttcgcgaagatca |
216 |
Q |
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| T |
53426449 |
caagatcatccttaactcctcaatcagagaatgacaatcaagtttatattgtgtatatgggagcttcacattcaactaatggttcccttcgcgaagatca |
53426350 |
T |
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| Q |
217 |
tgcccatattttaaacacagtgttaaaaaggtacttaattaattgaat |
264 |
Q |
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| T |
53426349 |
tgcccatattttaaacacagtgttaaaaaggtacttaattaattgaat |
53426302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 48 - 255
Target Start/End: Complemental strand, 53434678 - 53434471
Alignment:
| Q |
48 |
taaacatgaaaggaaattcagttctattggtactaatattttactcactcttccttttccttggagagtcaagatcatccttaactcctcaatcaaagaa |
147 |
Q |
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| T |
53434678 |
taaacatgaaaggaaatccaattttattgatattagtgttttactcactcttccttcttcttggagagtcaaggtcatacttagctaataaatcaaagaa |
53434579 |
T |
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| Q |
148 |
tgacaatcaagtttatattgtgtatatgggagctgcacattcagctaatggttcccttcgcgaagatcatgcccatattttaaacacagtgttaaaaagg |
247 |
Q |
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| T |
53434578 |
tgaaaatcaaatttatattgtgtatatgggagctacggattcaatagatggttcccttcgtaaagatcatgcctatgttttaagcacagtgttaagaagg |
53434479 |
T |
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| Q |
248 |
tacttaat |
255 |
Q |
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| T |
53434478 |
taattaat |
53434471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 26099611 - 26099395
Alignment:
| Q |
41 |
agaatactaaacatgaaaggaaattcagttctattggtactaatattttactcactcttccttttccttggagagtcaagatcatccttaactcctcaat |
140 |
Q |
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| T |
26099611 |
agaatgctaaacatgaaaagaaatccaattttcttgatactaacattttactctctcttcctt---cttggagagttaaaatcatctttagctactcaac |
26099515 |
T |
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| Q |
141 |
caaagaatgacaatcaagtttatattgtgtatatgggagctgcacattcagctaatggttcccttcgcgaagatcatgcccatattttaaacacagtgtt |
240 |
Q |
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| T |
26099514 |
caaagaatgaaaatcaagtttatattgtgtacatgggaggtgtggattcaactaatggttcccttcgtaaagatcatgatcatgttttaaacatggtgtt |
26099415 |
T |
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| Q |
241 |
aaaaaggtacttaattaatt |
260 |
Q |
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| T |
26099414 |
aagaaggtaattaattaatt |
26099395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 53311194 - 53311123
Alignment:
| Q |
135 |
ctcaatcaaagaatgacaatcaagtttatattgtgtatatgggagctgcacattcagctaatggttcccttc |
206 |
Q |
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| T |
53311194 |
ctcaatcggagaatgacaaacaagtttatattgtgtacatgggagctgcagattcaactaatagtacccttc |
53311123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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