View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_low_44 (Length: 277)
Name: NF20016_low_44
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 33940627 - 33940366
Alignment:
| Q |
1 |
aaacactcaacatatcaa-tatcttcacaattttttactatctaaactgtaattatgaaactgcaacaacaaaaaccaaaccatattccattaaataaga |
99 |
Q |
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||||||||||||||| || | | |||||||||||||||||||| ||| ||||||||||||| ||||||||||||| |||||||||||||||||| ||||| |
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| T |
33940627 |
aaacactcaacatattaaatgtgttcacaattttttactatctgaacagtaattatgaaaccgcaacaacaaaaatcaaaccatattccattaagtaaga |
33940528 |
T |
|
| Q |
100 |
ctgactacatggattaaaccacgctataacattctatcataaaccataattcggtcagactaccaagctacaaattcaattaaaatcttgataagtggta |
199 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33940527 |
ctgactacatggattaaaccatgctataacattctatcctaaaccataattcggtcagactaccaagctacaaattcaattaaaatcttgataagtggta |
33940428 |
T |
|
| Q |
200 |
aagatgaagaagatagatgatgataacatgatatctaggttttaatgtagacataaggagtg |
261 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33940427 |
aagatgaagaagagatatgatgataacatgatatctaggttttaatgtagacataaggagtg |
33940366 |
T |
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