View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_low_5 (Length: 536)
Name: NF20016_low_5
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 263 - 520
Target Start/End: Complemental strand, 42224992 - 42224735
Alignment:
| Q |
263 |
ttcttatccttataagcatgacttctccgccacaggctcatcggagaaaattctccggtaaggccccgctgaattcttgtcgtaaactccataattcaca |
362 |
Q |
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| T |
42224992 |
ttcttatccttataagcatgacttctccgccacaggctaatcggagaaaattctccggtaaggccccgctgaattcttgtcgtaaactccataattcaca |
42224893 |
T |
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| Q |
363 |
gccagagaaacactctggcaatgttgatcgtcggtttgtctcaactcctctgatgccgaagatgcaaactgatgacactgttcttaggccatcaaaactg |
462 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42224892 |
gccagagaaacactctggcaatgttgatcgtcggtttgtctcaactcctatgatgccgaagatgcaaactaatgacactgttcttaggccatcaaaactg |
42224793 |
T |
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| Q |
463 |
ctactgaaggtgacaatcgaaaacagcttgggtgcaattcagatgttgatgttgtctg |
520 |
Q |
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| T |
42224792 |
ctactgaaggtgacaatcgaaaacagcttgggcgcaattcagatgttgatgttgtctg |
42224735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 42225233 - 42225029
Alignment:
| Q |
22 |
tgtgaagatgtttgagaaaatgacattagagtgtatcctcttcgaaacaaacgttaaaattcccgccactttctgagaagcttcctaaccataaccaacc |
121 |
Q |
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| T |
42225233 |
tgtgaagatgtttgagaaaatgacattagagtgtatcctcttcgaaacaaacgttaaaattcccgccactttctgagaagcttcctaaccataaccaacc |
42225134 |
T |
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| Q |
122 |
aaatctcaattgtttgtttctattacttctgcttcttaagtaagttcaaaacagcactactcaaagccataacagtgatgcatggtagtgctaatccata |
221 |
Q |
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| T |
42225133 |
aaatctcaattgtttgtttctattacttctgcttcttaagtaagttcaaaacaacactactcaaagccattacagcaatacatgctagtgctaatccata |
42225034 |
T |
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| Q |
222 |
tctct |
226 |
Q |
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||||| |
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| T |
42225033 |
tctct |
42225029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 52706428 - 52706359
Alignment:
| Q |
117 |
caaccaaatctcaattgtttgtttctattacttctgcttcttaagtaagttcaaaacagcactactcaaa |
186 |
Q |
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| T |
52706428 |
caacaaaatctcaattgtttgtgtctattaattttggttcttaatttagttcagaaaaacactactcaaa |
52706359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 93002 - 92922
Alignment:
| Q |
117 |
caaccaaatctcaattgtttgtttctattacttctgcttcttaagtaagttcaaaacagcactactcaaagccataacagt |
197 |
Q |
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|||| ||||||||||||||||| |||||||||| |||||||||| | ||||||||||| ||||||||||| |||||||||| |
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| T |
93002 |
caacaaaatctcaattgtttgtgtctattacttttgcttcttaatttagttcaaaacaacactactcaaacccataacagt |
92922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 52043052 - 52042973
Alignment:
| Q |
117 |
caaccaaatctcaattgtttgtttctattacttctgcttcttaagtaagttcaaaacagcactactcaaagccataacag |
196 |
Q |
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|||| ||||||||||||||||| |||||||||| |||||||||| | ||||||||||| ||||||||||| ||||||||| |
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| T |
52043052 |
caacaaaatctcaattgtttgtgtctattacttttgcttcttaatttagttcaaaacaacactactcaaacccataacag |
52042973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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