View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20016_low_51 (Length: 263)
Name: NF20016_low_51
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_51 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 40512006 - 40512258
Alignment:
| Q |
1 |
aaaaatgattatattggtatccaattaataaaatttattcgtaaaccaacttatccgtcaacgttcttttagaactgaggttgaactaagaccagatctt |
100 |
Q |
| |
|
|||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40512006 |
aaaattgattatattggtatctaatgaataaaatttattcgtaaaccaacttatccgtcaacgttcttttagaactgaggttgaactaagaccagatctt |
40512105 |
T |
|
| Q |
101 |
atgaatgaattgttgctcttattcattcaataatcgtctcggttgaggaattgaatttaacttgnnnnnnncctcactcaaaatgctttgttttgttgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
40512106 |
atgaatgaattgttgctcttattcattcaataatcgtctcggttgaggaattgagtttaacttgtttttttcctcactcaaaatgatttgttttgttgca |
40512205 |
T |
|
| Q |
201 |
acctaaataacaatgtaatccaatttgttaaggtttgtacgcagctccctatg |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
40512206 |
acctaaataacaatgtaatccaatttgttaaggttggtacgcagctctctatg |
40512258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University