View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_low_56 (Length: 254)
Name: NF20016_low_56
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 52971184 - 52971408
Alignment:
| Q |
18 |
gtttcaatcccaaaataacaagaactctttgcaactcctttgcatcaataaaaccatctttgttctcatcaaaaacatcaaaagcttgcttcaactccac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
52971184 |
gtttcaatcccaaaataacaagaactctttgcaactcctttgcatcaataaaaccatctttgttctcatcaaaaacatcaaaagcttgcttcaactcctc |
52971283 |
T |
|
| Q |
118 |
caaactaggctcattctcttcaaacacttcacaaagctccttggaaccatacttttcttcaagttcctcgctttctgagctgcnnnnnnntcccattttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52971284 |
caaactaggctcattctcttcaaacacttcacaaagctccttggaaccatacttttcttcaagttcctcgctttctgagctgcaaaaaaatcccattttt |
52971383 |
T |
|
| Q |
218 |
tccatcaccattttcacttcatctc |
242 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
52971384 |
tccatcaccattttcacttcatctc |
52971408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 52967306 - 52967369
Alignment:
| Q |
29 |
aaaataacaagaactctttgcaactcctttgcatc-aataaaaccatctttgttctcatcaaaa |
91 |
Q |
| |
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|||||| ||||||||||||||||||||| |||||| || ||||||||||||||| ||||||||| |
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| T |
52967306 |
aaaatagcaagaactctttgcaactcctatgcatcaaacaaaaccatctttgttgtcatcaaaa |
52967369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 52967393 - 52967467
Alignment:
| Q |
125 |
ggctcattctcttcaaacacttcacaaagctccttggaaccatacttttcttcaagttcctcgctttctgagctgc |
200 |
Q |
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||||||||||| | |||||||||||||| |||||| |||| |||||||| ||||||| ||| ||| ||||||||| |
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| T |
52967393 |
ggctcattctcctaaaacacttcacaaacctcctt-gaactatacttttactcaagtttctcacttactgagctgc |
52967467 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 2855992 - 2855815
Alignment:
| Q |
23 |
aatcccaaaataacaagaactctttgcaactcctttgcatcaataaaaccatctttgttctcatcaaaaacatcaaaagcttgcttcaactccaccaaac |
122 |
Q |
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|||||||||||| | |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| |
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| T |
2855992 |
aatcccaaaatacacataactcttttcaactccattgcatcaataaaaccatctttgttctcatcaaaaacatcaaaagccatcttcacttcctccaaac |
2855893 |
T |
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| Q |
123 |
taggctcattctcttcaaacacttcacaaagctccttggaaccatacttttcttcaagttcctcgctttctgagctgc |
200 |
Q |
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| ||||||||||| ||||||| |||| ||| |||||| |||| ||| |||||||||||||| || ||||||||||||| |
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| T |
2855892 |
ttggctcattctcatcaaacaattcagaaaactccttcgaactatatttttcttcaagttcatcactttctgagctgc |
2855815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 2851900 - 2851720
Alignment:
| Q |
23 |
aatcccaaaataacaagaactctttgcaactcctttgcatcaataaaaccatctttgttctcatcaaaaacat-------caaaagcttgcttcaactcc |
115 |
Q |
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|||||||||||| | |||||||||||||||| |||||||||||| |||||||||||||||| |||| ||| |||||| ||||| ||| |
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| T |
2851900 |
aatcccaaaatacacataactctttgcaactccattgcatcaataa--ccatctttgttctcattaaaaccataaaaattcaaaagtcatcttcacttcc |
2851803 |
T |
|
| Q |
116 |
accaaactaggctcattctcttcaaacacttcacaaagctccttggaaccatacttttcttcaagttcctcgctttctgagct |
198 |
Q |
| |
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| |||| || |||||||| ||||||| |||| ||||||||| |||||||| |||||||||||||| || ||||||||||| |
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| T |
2851802 |
tctaaacatggttcattctcatcaaacaattcaagaagctcctttgaaccatatttttcttcaagttcatcactttctgagct |
2851720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 10477914 - 10477734
Alignment:
| Q |
20 |
ttcaatcccaaaataacaagaactctttgcaactcctttgcatcaataaaaccatctttgttctcatcaaaaacatcaaaagcttgcttcaactccacca |
119 |
Q |
| |
|
||||||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||| ||| |
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| T |
10477914 |
ttcaatcccaaaatacacataactctttgcaattcctttgcatcaataaatccatctttgttctcatcaaaaacgtcaaaagccatcttcacttcctcca |
10477815 |
T |
|
| Q |
120 |
aactaggctcattctcttcaaacacttcacaaagctccttggaaccatacttttcttcaagttcctcgctttctgagctgc |
200 |
Q |
| |
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|||| ||||||||||| ||||||| |||| |||| || || |||||||| ||||| |||||||| || ||||||||||||| |
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| T |
10477814 |
aacttggctcattctcatcaaacaattcagaaagttcatttgaaccatatttttcatcaagttcatcactttctgagctgc |
10477734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 200
Target Start/End: Complemental strand, 8216255 - 8216104
Alignment:
| Q |
49 |
caactcctttgcatcaataaaaccatctttgttctcatcaaaaacatcaaaagcttgcttcaactccaccaaactaggctcattctcttcaaacacttca |
148 |
Q |
| |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||| || | ||| ||||||| ||||||||||| ||||||| |||| |
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| T |
8216255 |
caactccattgaatcaataaaaccatctttgttctcatcaaaaacatcaaaagccatctaaacttcctccaaacttggctcattctcatcaaacaattca |
8216156 |
T |
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| Q |
149 |
caaagctccttggaaccatacttttcttcaagttcctcgctttctgagctgc |
200 |
Q |
| |
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||| |||||| |||| ||| |||||||||||||| || |||||| |||||| |
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| T |
8216155 |
gaaaactccttcgaactatatttttcttcaagttcatcactttctaagctgc |
8216104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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