View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20016_low_65 (Length: 241)
Name: NF20016_low_65
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_65 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 32540463 - 32540684
Alignment:
| Q |
1 |
tgtatttagaatatggaatagttaactaatggactaacatttctaaactcattcatgacagtcctccaaaggacactgcatctcatcttactgatcatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32540463 |
tgtatttagaatatggaatagtta-ctaatggactaacatttctaaacccattcatgacagtcctccaaaggacactgcatctcatcttactgatcatgt |
32540561 |
T |
|
| Q |
101 |
aacagaacagactattagaaaatcaactaatagtgaagtagaaaggtaaaaggcaagacttgtagtcgaaggatatacttaacttgaaggtatagatttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32540562 |
aacagaacagactattagaaaatcaactaatagtgaagtagaaaggtaaaaggaaagacttgtagtcgaaggatatacttaacttgaaggtatagatttc |
32540661 |
T |
|
| Q |
201 |
ttcgaaactaaattgaccatatt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
32540662 |
ttcgaaactaaattgaccatatt |
32540684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University