View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20016_low_68 (Length: 239)
Name: NF20016_low_68
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_68 |
 | |
|
| [»] scaffold1995 (1 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold1995 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold1995
Description:
Target: scaffold1995; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 127 - 347
Alignment:
| Q |
19 |
ctctacgccacagcaaatgttaacgtcccagatttcttcaagaaatctcgatggccagataaatattggagcgaacacgcaaattggatgggatacatag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
127 |
ctctacgccacagcaaatgttaacgtcccagatttcttcaagaaatctcgatggccagataaatattggagcgaacacgcgaattggatgggatacatag |
226 |
T |
|
| Q |
119 |
ccgtttcaaatgatgaagcaacaaaacaaataggtgtgtgattaacgtttacaaatgtacttttgagtaaatgttactccctcatgtatcaaatataaga |
218 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
227 |
ccgtttcaaacgatgaaacaacaaaacaaataggtgtgtgattaacgtttacaaatgtacttatgagtaaatgttactccctcatgtatcaaatataaga |
326 |
T |
|
| Q |
219 |
aataattggtcaaagaaagtt |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
327 |
aataattggtcaaagaaagtt |
347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 38552464 - 38552684
Alignment:
| Q |
19 |
ctctacgccacagcaaatgttaacgtcccagatttcttcaagaaatctcgatggccagataaatattggagcgaacacgcaaattggatgggatacatag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38552464 |
ctctacgccacagcaaatgttaacgtcccagatttcttcaagaaatctcgatggccagataaatattggagcgaacacgcgaattggatgggatacatag |
38552563 |
T |
|
| Q |
119 |
ccgtttcaaatgatgaagcaacaaaacaaataggtgtgtgattaacgtttacaaatgtacttttgagtaaatgttactccctcatgtatcaaatataaga |
218 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38552564 |
ccgtttcaaacgatgaaacaacaaaacaaataggtgtgtgattaacgtttacaaatgtacttatgagtaaatgttactccctcatgtatcaaatataaga |
38552663 |
T |
|
| Q |
219 |
aataattggtcaaagaaagtt |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
38552664 |
aataattggtcaaagaaagtt |
38552684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 38546065 - 38546250
Alignment:
| Q |
19 |
ctctacgccacagcaaatgttaacgtcccagatttcttcaagaaatctcgatggccagataaatattggagcgaacacgcaaattggatgggatacatag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38546065 |
ctctacgccacagcaaatgttaacgtcccagatttcttcaagaaatctcgatggccagataaatattggagcgaacacgcgaattggatgggatacatag |
38546164 |
T |
|
| Q |
119 |
ccgtttcaaatgatgaagcaacaaaacaaataggtgtgtgattaacgtttacaaatgtacttttgagtaaatgttactccctcatg |
204 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38546165 |
ctgtttcaaacgatgaagcaacaaaacaaataggtgtgtgattaacgtttacaaatgtacttttgagtaaatgttattccctcatg |
38546250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University