View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_low_70 (Length: 237)
Name: NF20016_low_70
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_70 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 29967390 - 29967605
Alignment:
| Q |
16 |
atgcttaaacgaaacgtgtggtgtcgtctgagtatcaaagattctgaaatgaaatgaaatgaaatgaaattattagttccaattaaacaacacaagttag |
115 |
Q |
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| T |
29967390 |
atgcttaaacgaaacgtgtggtgtcgtctgagtatcaaagattctgaa----------atgaaatgaaattattagttccaattaaacaacacaagttag |
29967479 |
T |
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| Q |
116 |
ttaccgttactttatg----ataacttacggaagagggtaaccagaggttaaattagtttctgagaagagaatagagtgaaagtgtataggctggtgagt |
211 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29967480 |
ttaccgttactttatgatatataacttacggaagagggtaaccagaggttaaattagtttctgagaagagaatagagtgaaagtgtataggctggtgagt |
29967579 |
T |
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| Q |
212 |
ctgaagaaaatgagcccagagttcgt |
237 |
Q |
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|||||||||||||||||||||||||| |
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| T |
29967580 |
ctgaagaaaatgagcccagagttcgt |
29967605 |
T |
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