View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20016_low_79 (Length: 211)

Name: NF20016_low_79
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20016_low_79
NF20016_low_79
[»] chr2 (7 HSPs)
chr2 (26-143)||(4795104-4795224)
chr2 (134-171)||(34944416-34944453)
chr2 (138-171)||(6027618-6027651)
chr2 (138-171)||(11852189-11852222)
chr2 (138-170)||(1142997-1143029)
chr2 (131-171)||(2200244-2200284)
chr2 (131-171)||(44436825-44436865)
[»] scaffold0236 (1 HSPs)
scaffold0236 (138-171)||(17464-17497)
[»] chr3 (17 HSPs)
chr3 (133-202)||(27646279-27646348)
chr3 (138-202)||(1111621-1111685)
chr3 (135-171)||(33212394-33212430)
chr3 (129-172)||(11354542-11354585)
chr3 (129-171)||(34811306-34811348)
chr3 (130-171)||(2993251-2993292)
chr3 (138-171)||(6784727-6784760)
chr3 (138-171)||(21458982-21459015)
chr3 (138-171)||(24813602-24813635)
chr3 (138-171)||(28673298-28673331)
chr3 (138-171)||(50517526-50517559)
chr3 (138-171)||(53164163-53164196)
chr3 (138-171)||(54866537-54866570)
chr3 (138-170)||(31541027-31541059)
chr3 (144-172)||(39952534-39952562)
chr3 (138-170)||(42044257-42044289)
chr3 (131-171)||(53687001-53687041)
[»] scaffold0250 (1 HSPs)
scaffold0250 (138-202)||(9399-9463)
[»] chr4 (12 HSPs)
chr4 (135-171)||(55014972-55015008)
chr4 (132-171)||(13620858-13620897)
chr4 (138-171)||(3085445-3085478)
chr4 (138-171)||(26889903-26889936)
chr4 (138-171)||(28298375-28298408)
chr4 (138-171)||(36901114-36901147)
chr4 (138-171)||(39114891-39114924)
chr4 (131-171)||(17610024-17610064)
chr4 (135-171)||(28495377-28495413)
chr4 (135-171)||(53564360-53564396)
chr4 (127-163)||(54878027-54878063)
chr4 (135-171)||(55563131-55563167)
[»] scaffold0674 (1 HSPs)
scaffold0674 (128-171)||(5141-5184)
[»] scaffold0549 (1 HSPs)
scaffold0549 (128-171)||(10186-10229)
[»] scaffold0240 (1 HSPs)
scaffold0240 (128-171)||(18487-18530)
[»] chr5 (9 HSPs)
chr5 (138-210)||(14649188-14649257)
chr5 (133-171)||(19571943-19571981)
chr5 (138-171)||(22657768-22657801)
chr5 (135-204)||(23286445-23286514)
chr5 (138-171)||(27873349-27873382)
chr5 (138-171)||(40643094-40643127)
chr5 (131-171)||(4976294-4976334)
chr5 (131-171)||(9065172-9065212)
chr5 (138-170)||(40738410-40738442)
[»] scaffold0161 (1 HSPs)
scaffold0161 (133-171)||(3433-3471)
[»] chr7 (10 HSPs)
chr7 (137-171)||(19845673-19845707)
chr7 (138-171)||(7400129-7400162)
chr7 (138-171)||(9140537-9140570)
chr7 (131-204)||(17317435-17317507)
chr7 (138-171)||(19292839-19292872)
chr7 (138-171)||(21119557-21119590)
chr7 (138-171)||(22991748-22991781)
chr7 (138-171)||(27529229-27529262)
chr7 (138-171)||(29629716-29629749)
chr7 (138-171)||(41444467-41444500)
[»] chr1 (5 HSPs)
chr1 (141-171)||(51467476-51467506)
chr1 (138-171)||(3934606-3934639)
chr1 (130-171)||(21631111-21631152)
chr1 (138-171)||(22567066-22567099)
chr1 (135-171)||(25284071-25284107)
[»] chr8 (4 HSPs)
chr8 (138-171)||(4778591-4778624)
chr8 (138-171)||(41898500-41898533)
chr8 (135-171)||(44502617-44502653)
chr8 (135-171)||(45283796-45283832)
[»] chr6 (1 HSPs)
chr6 (138-171)||(9341838-9341871)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 4795224 - 4795104
Alignment:
Q  26 cataacaaaatcgttgttcatttttcagagtcattcgtgtgttgtgaattttga---gccagatgagctgggatggctagtgccaaccaatcagttcacg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  4795224 cataacaaaatcgttgttcatttttcagagtcattcgtgtgttgtgaattttgatgagccagatgagctgggatggctagtgccaaccaatcagttcacg 4795125  T
Q  123 acacataatatttattactat 143  Q
    |||| ||||||||||||||||    
T  4795124 acacctaatatttattactat 4795104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 34944453 - 34944416
Alignment:
Q  134 ttattactatctccgtccctaattataagatccttttg 171  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  34944453 ttattactatctccgtccctaattataagatccctttg 34944416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 6027618 - 6027651
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  6027618 tactacctccgtccctaattataagatccttttg 6027651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 11852222 - 11852189
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  11852222 tactacctccgtccctaattataagatccttttg 11852189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 1142997 - 1143029
Alignment:
Q  138 tactatctccgtccctaattataagatcctttt 170  Q
    ||||| |||||||||||||||||||||||||||    
T  1142997 tactacctccgtccctaattataagatcctttt 1143029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 2200284 - 2200244
Alignment:
Q  131 tatttattactatctccgtccctaattataagatccttttg 171  Q
    |||||| ||||| |||||||||||||||||||| |||||||    
T  2200284 tatttactactacctccgtccctaattataagacccttttg 2200244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 44436865 - 44436825
Alignment:
Q  131 tatttattactatctccgtccctaattataagatccttttg 171  Q
    |||||||||||| ||||||||||||| |||||| |||||||    
T  44436865 tatttattactacctccgtccctaatgataagacccttttg 44436825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 17464 - 17497
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||||||||||||||||||||||||||||||||    
T  17464 tactatctccgtccctaattataagatccttttg 17497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 27646348 - 27646279
Alignment:
Q  133 tttattactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagaccc 202  Q
    |||| ||||| ||||||||||||||||||||||||||||         ||||||||||||||||||||||    
T  27646348 tttactactacctccgtccctaattataagatccttttgagaaatttttttgtctctttttataagaccc 27646279  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 1111685 - 1111621
Alignment:
Q  138 tactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagaccc 202  Q
    |||||||||||||||||||||||||| |||||||         ||||||||||||||||||||||    
T  1111685 tactatctccgtccctaattataagacccttttgagaaatttttttgtctctttttataagaccc 1111621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 33212394 - 33212430
Alignment:
Q  135 tattactatctccgtccctaattataagatccttttg 171  Q
    |||||||| ||||||||||||||||||||||||||||    
T  33212394 tattactacctccgtccctaattataagatccttttg 33212430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 11354542 - 11354585
Alignment:
Q  129 aatatttattactatctccgtccctaattataagatccttttgt 172  Q
    ||||| |||||||| ||||||||| |||||||||||||||||||    
T  11354542 aatatatattactaactccgtcccaaattataagatccttttgt 11354585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 34811306 - 34811348
Alignment:
Q  129 aatatttattactatctccgtccctaattataagatccttttg 171  Q
    |||||||| || || ||||||||||||||||||||||||||||    
T  34811306 aatatttaatattacctccgtccctaattataagatccttttg 34811348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 2993251 - 2993292
Alignment:
Q  130 atatttattactatctccgtccctaattataagatccttttg 171  Q
    ||||||| ||||| |||||||||||||||||||||| |||||    
T  2993251 atatttaatactacctccgtccctaattataagatcattttg 2993292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 6784760 - 6784727
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    |||||||||||||||||||||||||| |||||||    
T  6784760 tactatctccgtccctaattataagacccttttg 6784727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 21458982 - 21459015
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  21458982 tactacctccgtccctaattataagatccttttg 21459015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 24813602 - 24813635
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  24813602 tactacctccgtccctaattataagatccttttg 24813635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 28673331 - 28673298
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  28673331 tactacctccgtccctaattataagatccttttg 28673298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 50517559 - 50517526
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  50517559 tactacctccgtccctaattataagatccttttg 50517526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 53164163 - 53164196
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  53164163 tactacctccgtccctaattataagatccttttg 53164196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 54866570 - 54866537
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  54866570 tactacctccgtccctaattataagatccttttg 54866537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 31541027 - 31541059
Alignment:
Q  138 tactatctccgtccctaattataagatcctttt 170  Q
    |||||||||||||||||||||||||||| ||||    
T  31541027 tactatctccgtccctaattataagatcatttt 31541059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 172
Target Start/End: Complemental strand, 39952562 - 39952534
Alignment:
Q  144 ctccgtccctaattataagatccttttgt 172  Q
    |||||||||||||||||||||||||||||    
T  39952562 ctccgtccctaattataagatccttttgt 39952534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 42044289 - 42044257
Alignment:
Q  138 tactatctccgtccctaattataagatcctttt 170  Q
    ||||| |||||||||||||||||||||||||||    
T  42044289 tactacctccgtccctaattataagatcctttt 42044257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 53687041 - 53687001
Alignment:
Q  131 tatttattactatctccgtccctaattataagatccttttg 171  Q
    |||||||||||||||| |||| ||||||||||| |||||||    
T  53687041 tatttattactatctctgtccataattataagacccttttg 53687001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 9463 - 9399
Alignment:
Q  138 tactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagaccc 202  Q
    ||||| ||||||||||||||||||||||||||||         ||||||||||||||||||||||    
T  9463 tactacctccgtccctaattataagatccttttgagaattttttttgtctctttttataagaccc 9399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 55015008 - 55014972
Alignment:
Q  135 tattactatctccgtccctaattataagatccttttg 171  Q
    ||||||||||||||||| |||||||||||||||||||    
T  55015008 tattactatctccgtccataattataagatccttttg 55014972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 13620897 - 13620858
Alignment:
Q  132 atttattactatctccgtccctaattataagatccttttg 171  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  13620897 atttgttactacctccgtccctaattataagatccttttg 13620858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 3085445 - 3085478
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  3085445 tactacctccgtccctaattataagatccttttg 3085478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 26889936 - 26889903
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  26889936 tactacctccgtccctaattataagatccttttg 26889903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 28298408 - 28298375
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  28298408 tactacctccgtccctaattataagatccttttg 28298375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 36901147 - 36901114
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  36901147 tactacctccgtccctaattataagatccttttg 36901114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 39114924 - 39114891
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  39114924 tactacctccgtccctaattataagatccttttg 39114891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 17610064 - 17610024
Alignment:
Q  131 tatttattactatctccgtccctaattataagatccttttg 171  Q
    |||||| ||||  ||||||||||||||||||||||||||||    
T  17610064 tatttaatactccctccgtccctaattataagatccttttg 17610024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 28495377 - 28495413
Alignment:
Q  135 tattactatctccgtccctaattataagatccttttg 171  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  28495377 tattactacctctgtccctaattataagatccttttg 28495413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 53564396 - 53564360
Alignment:
Q  135 tattactatctccgtccctaattataagatccttttg 171  Q
    |||||||| |||||||||||||||||||| |||||||    
T  53564396 tattactacctccgtccctaattataagacccttttg 53564360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 54878063 - 54878027
Alignment:
Q  127 ataatatttattactatctccgtccctaattataaga 163  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  54878063 ataatattaattactacctccgtccctaattataaga 54878027  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 55563167 - 55563131
Alignment:
Q  135 tattactatctccgtccctaattataagatccttttg 171  Q
    |||||||| |||||||||||||||||||| |||||||    
T  55563167 tattactacctccgtccctaattataagacccttttg 55563131  T

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Target: scaffold0674 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 5141 - 5184
Alignment:
Q  128 taatatttattactatctccgtccctaattataagatccttttg 171  Q
    |||| |||||||||| |||||||||||||||||||| |||||||    
T  5141 taatgtttattactacctccgtccctaattataagacccttttg 5184  T

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Target: scaffold0549 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 10229 - 10186
Alignment:
Q  128 taatatttattactatctccgtccctaattataagatccttttg 171  Q
    |||| |||||||||| |||||||||||||||||||| |||||||    
T  10229 taatgtttattactacctccgtccctaattataagacccttttg 10186  T

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Target: scaffold0240 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 18487 - 18530
Alignment:
Q  128 taatatttattactatctccgtccctaattataagatccttttg 171  Q
    |||| |||||||||| |||||||||||||||||||| |||||||    
T  18487 taatgtttattactacctccgtccctaattataagacccttttg 18530  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 14649188 - 14649257
Alignment:
Q  138 tactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctatgcta 210  Q
    ||||| |||||||||||||||||||||||||||||        ||| |||||||||||||||||||| |||||    
T  14649188 tactacctccgtccctaattataagatccttttgt---gattttttttctctttttataagacccctttgcta 14649257  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 19571981 - 19571943
Alignment:
Q  133 tttattactatctccgtccctaattataagatccttttg 171  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  19571981 tttattactacctccgtccctaattataagacccttttg 19571943  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 22657768 - 22657801
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  22657768 tactacctccgtccctaattataagatccttttg 22657801  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 23286514 - 23286445
Alignment:
Q  135 tattactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccct 204  Q
    |||||||| |||||||||||||||||||| |||||||         |||||| |||||||||||||||||    
T  23286514 tattactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacccct 23286445  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 27873382 - 27873349
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    |||||||||||||||||||||||||| |||||||    
T  27873382 tactatctccgtccctaattataagacccttttg 27873349  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 40643094 - 40643127
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  40643094 tactacctccgtccctaattataagatccttttg 40643127  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 4976334 - 4976294
Alignment:
Q  131 tatttattactatctccgtccctaattataagatccttttg 171  Q
    |||||| ||||| |||||||||||||||||||| |||||||    
T  4976334 tatttagtactacctccgtccctaattataagacccttttg 4976294  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 9065212 - 9065172
Alignment:
Q  131 tatttattactatctccgtccctaattataagatccttttg 171  Q
    |||||| |||||||||||||||||||||||||  |||||||    
T  9065212 tatttagtactatctccgtccctaattataaggcccttttg 9065172  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 40738410 - 40738442
Alignment:
Q  138 tactatctccgtccctaattataagatcctttt 170  Q
    ||||| |||||||||||||||||||||||||||    
T  40738410 tactacctccgtccctaattataagatcctttt 40738442  T

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Target: scaffold0161 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 3433 - 3471
Alignment:
Q  133 tttattactatctccgtccctaattataagatccttttg 171  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  3433 tttattactacctccgtccctaattataagacccttttg 3471  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 19845707 - 19845673
Alignment:
Q  137 ttactatctccgtccctaattataagatccttttg 171  Q
    |||||| ||||||||||||||||||||||||||||    
T  19845707 ttactacctccgtccctaattataagatccttttg 19845673  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 7400129 - 7400162
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  7400129 tactacctccgtccctaattataagatccttttg 7400162  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 9140570 - 9140537
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    |||||||||||||||||||||||||| |||||||    
T  9140570 tactatctccgtccctaattataagacccttttg 9140537  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 17317435 - 17317507
Alignment:
Q  131 tatttattactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccct 204  Q
    |||||||||||  ||||||||||||||||||||||||||||         |||||| |||||||||||||||||    
T  17317435 tatttattactc-ctccgtccctaattataagatccttttgagaattttttttgtccctttttataagacccct 17317507  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 19292839 - 19292872
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  19292839 tactacctccgtccctaattataagatccttttg 19292872  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 21119557 - 21119590
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  21119557 tactacctccgtccctaattataagatccttttg 21119590  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 22991781 - 22991748
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  22991781 tactacctccgtccctaattataagatccttttg 22991748  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 27529229 - 27529262
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  27529229 tactacctccgtccctaattataagatccttttg 27529262  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 29629716 - 29629749
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    |||||||||||||||||||||||||| |||||||    
T  29629716 tactatctccgtccctaattataagaaccttttg 29629749  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 41444500 - 41444467
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  41444500 tactacctccgtccctaattataagatccttttg 41444467  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 51467506 - 51467476
Alignment:
Q  141 tatctccgtccctaattataagatccttttg 171  Q
    |||||||||||||||||||||||||||||||    
T  51467506 tatctccgtccctaattataagatccttttg 51467476  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 3934606 - 3934639
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  3934606 tactacctccgtccctaattataagatccttttg 3934639  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 21631152 - 21631111
Alignment:
Q  130 atatttattactatctccgtccctaattataagatccttttg 171  Q
    |||| |||||||| |||||||||||||||||||| |||||||    
T  21631152 atatatattactacctccgtccctaattataagacccttttg 21631111  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 22567066 - 22567099
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  22567066 tactacctccgtccctaattataagatccttttg 22567099  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 25284107 - 25284071
Alignment:
Q  135 tattactatctccgtccctaattataagatccttttg 171  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  25284107 tattactacctccgtccctaattataggatccttttg 25284071  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 4778591 - 4778624
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||||||||||| ||||||||||||||||||||    
T  4778591 tactatctccgtctctaattataagatccttttg 4778624  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 41898533 - 41898500
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  41898533 tactacctccgtccctaattataagatccttttg 41898500  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 44502617 - 44502653
Alignment:
Q  135 tattactatctccgtccctaattataagatccttttg 171  Q
    |||||||  ||||||||||||||||||||||||||||    
T  44502617 tattactccctccgtccctaattataagatccttttg 44502653  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 45283832 - 45283796
Alignment:
Q  135 tattactatctccgtccctaattataagatccttttg 171  Q
    |||||||| |||||||||||||||||||| |||||||    
T  45283832 tattactacctccgtccctaattataagacccttttg 45283796  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 9341838 - 9341871
Alignment:
Q  138 tactatctccgtccctaattataagatccttttg 171  Q
    ||||| ||||||||||||||||||||||||||||    
T  9341838 tactacctccgtccctaattataagatccttttg 9341871  T

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