View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20016_low_82 (Length: 202)
Name: NF20016_low_82
Description: NF20016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20016_low_82 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 10910241 - 10910076
Alignment:
| Q |
20 |
gcatggtatagttctgagcttctaggcattgctgcttctgctttccgttctccatctgatgaagaagaagcttctcctcctcagagacttcttcaaacca |
119 |
Q |
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| T |
10910241 |
gcatggtatagttctgagcttctaggcattgctgcttctgctttccgttctccatctgatgaagaagaagcttctcctcctcagagacttcttcaaacca |
10910142 |
T |
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| Q |
120 |
ttgatcgtgcttctgttgtggacacaatcaaacaagacttccaaagatcttattttgtcacaggtt |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10910141 |
ttgatcgtgcttctgttgtggacacaatcaaacaagacttccaaagatcttattttgtcacaggtt |
10910076 |
T |
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Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 13725188 - 13725353
Alignment:
| Q |
20 |
gcatggtatagttctgagcttctaggcattgctgcttctgctttccgttctccatctgatgaagaagaagcttctcctcctcagagacttcttcaaacca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13725188 |
gcatggtatagttctgagcttctaggcattgctgcttctgctttccgttctccatctgatgaagaataagcttctcctcctcagagacttcttcaaacca |
13725287 |
T |
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| Q |
120 |
ttgatcgtgcttctgttgtggacacaatcaaacaagacttccaaagatcttattttgtcacaggtt |
185 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13725288 |
ttgatcgtgcttctgttgcggacacaatcaaacaagacttccaaagatcttattttgtcacaggtt |
13725353 |
T |
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