View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20017_high_12 (Length: 349)
Name: NF20017_high_12
Description: NF20017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20017_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 40720446 - 40720783
Alignment:
| Q |
1 |
cctttgattgccttggttggagggattttatgaccatcaagtagttgatatctgatcaactttcgttatgttaaaggcatactcggtcctattatctaat |
100 |
Q |
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| T |
40720446 |
cctttgattgccttggttggagggattttatgaccatcaagtagttgatatctggtcaactttcgttatgttaaaggcatactcggtcctattatctaat |
40720545 |
T |
|
| Q |
101 |
gaagtcttatccttttggttgaccttaagacaagacacgtgtagcttccccctttcaggatcttaatcagatgttagaatatcttttgtaggatcttttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40720546 |
gaagtcttatccttttggttgaccttaagacaagacacgtgtagcttccccctttcaggatcttaatcagatgttagaatatcttttgtaggatctaatc |
40720645 |
T |
|
| Q |
201 |
gattgatatataatcatcgaattctttcttgtcaacaatgaatactaagtgtaggcctctccttcgaccaacacatctcttttatctttcttgaatgaac |
300 |
Q |
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| T |
40720646 |
gattgatatataatcatcgaattctttcttgtcaacaattaatactaagtgtaggcctttccttcggccaacacatctcttttatctttcttgaatgaac |
40720745 |
T |
|
| Q |
301 |
tgctctatgtgtgctcctttggaagccaattctttcat |
338 |
Q |
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| T |
40720746 |
tgctctatgtgtgctccttgggaagccaattctttcat |
40720783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 23286534 - 23286477
Alignment:
| Q |
278 |
tcttttatctttcttgaatgaactgctctatgtgtgctcctttggaagccaattcttt |
335 |
Q |
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| T |
23286534 |
tcttttatctttcttgaatgaacttatctatgtgttctcctcaagaagccaattcttt |
23286477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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