View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20017_high_2 (Length: 501)
Name: NF20017_high_2
Description: NF20017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20017_high_2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 11 - 485
Target Start/End: Complemental strand, 14340770 - 14340296
Alignment:
| Q |
11 |
cataggaatgacaagtattagttctataaccaaattgctatataatagttggattggatattgaaccggttatatctctgttggttcaattggttttatc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
14340770 |
cataggaatgacaagtattagttctataaccaagttgctatataataattggattggatattgaaccggttatatctccgttggttcaattgtttttatc |
14340671 |
T |
|
| Q |
111 |
gactcaacccatgattgaaccagatgacatgcaagtgttgnnnnnnnnnnnnnn-taatgaaaatcaattaaaccaataccggttccacttggttcaatc |
209 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14340670 |
gactcaacc-atgattgaaccagatgacatgcaagtgttgaaaaaggaaaaaaaataatgaaaatcaattaaaccaataccggttccacttggttcaatc |
14340572 |
T |
|
| Q |
210 |
atactacaatataactggaatcaaaccaattgccaaacttgataataatgcatcaacaaggcttaatttctttggttgctaattattacctgcactgctt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
14340571 |
atactacaatataactggaatcaaaccaatcgccaaacttgataataatgcatcaacgaggcttaatttctttggttgctaattatcacctgcactgctt |
14340472 |
T |
|
| Q |
310 |
gggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatatcattttgtccaatatc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
14340471 |
gggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccatagctaatatcattttgtccaatatc |
14340372 |
T |
|
| Q |
410 |
aatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccctataaat |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14340371 |
aatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccctataaat |
14340296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 11 - 485
Target Start/End: Complemental strand, 3601890 - 3601422
Alignment:
| Q |
11 |
cataggaatgacaagtattagttctataaccaaattgctatataatagttggattggatattgaaccggttatatctctgttggttcaattggttttatc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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|
| T |
3601890 |
cataggaatgacaagtattagttctataaccaaattgctatataatgattggattggatattgaaccggttatatctccgttgtttcaattggttttatc |
3601791 |
T |
|
| Q |
111 |
gactcaacccatgattgaaccagatgacatgcaagtgttgnnnnnnnnnnnnnntaatgaaaatcaattaaaccaataccggttccacttggttcaatca |
210 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
3601790 |
gactcaacc-atgattgaaccagatgaca----agtgttgaaaaaggaaaaaa-taatgaaaatcaattaaaccaataccggttcaacttggttcaatca |
3601697 |
T |
|
| Q |
211 |
tactacaatataactggaatcaaaccaattgccaaacttgataataatgcatcaacaaggcttaatttctttggttgctaattattacctgcactgcttg |
310 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3601696 |
tactacaatgtaactggaatcaaaccaattgccaaacttgataataatgcatcaacaaggcttaatttctttggttgctaattattacctgcactgcttg |
3601597 |
T |
|
| Q |
311 |
ggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatatcattttgtccaatatca |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
3601596 |
ggtgaattggctcaagatatcaggaattgaccttctaacttcttcctctgaagagttcggcttctgcagaccatagccaatatcattttgtccaatatca |
3601497 |
T |
|
| Q |
411 |
atggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccctataaat |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
3601496 |
atggtgtaaatggcttttgagaaatcttcagtccttggaacgccacttctgagaggtggttctgtccctataaat |
3601422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 177 - 448
Target Start/End: Complemental strand, 3568732 - 3568467
Alignment:
| Q |
177 |
attaaaccaataccggttccacttggttcaatcatactacaatataactggaatcaaaccaattgccaaacttgataataatgcatcaacaaggcttaat |
276 |
Q |
| |
|
|||||||||||| |||| ||||||| |||||||||| |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3568732 |
attaaaccaatagatgttcaacttggtgcaatcatactgcaatgtaaccgtaatcaaaccaattgccaaacttgataataatgcatcaacaaggcttaat |
3568633 |
T |
|
| Q |
277 |
ttctttggttgctaattattacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctg |
376 |
Q |
| |
|
||||||||| | | | ||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| |||||||||||| |||||| |
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|
| T |
3568632 |
ttctttggtggttgctaattacctgcactgcttgggagaattggctcaagatgtcaggaattgaccttctaacttgttcctctgaaga------cttctg |
3568539 |
T |
|
| Q |
377 |
cagaccataaccaatatcattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttgg |
448 |
Q |
| |
|
||||||| | ||||||||||||||| |||||||||| ||||||||||| || |||||||||| | ||||||| |
|
|
| T |
3568538 |
cagaccaaagccaatatcattttgtgcaatatcaattgtgtaaatggccttagagaaatctttagtccttgg |
3568467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 11 - 272
Target Start/End: Complemental strand, 3590962 - 3590710
Alignment:
| Q |
11 |
cataggaatgacaagtattagttctataaccaaattgctatataatagttggattggatattgaaccggttatatctctgttggttcaattggttttatc |
110 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||||| |
|
|
| T |
3590962 |
cataagaatgacaactattagttctataaccaaaatgctatataataattggattggagattgaaccggtccggg---tgttggttcgattggttttatc |
3590866 |
T |
|
| Q |
111 |
gactcaacccatgattgaaccagatgacatgcaagtgttgnnnnnnnnnnnnnntaatgaaaatcaattaaaccaataccggttccacttggttcaatca |
210 |
Q |
| |
|
| ||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
3590865 |
ggctcaacc-atgattgaaccagatgaca----agtgttaaaaattgaaaaaaa-aatgaaaatcaattaaaccaataccggttcaacttagttcaatca |
3590772 |
T |
|
| Q |
211 |
tactacaatataactggaatcaaaccaattgccaaacttgataataatgcatcaacaaggct |
272 |
Q |
| |
|
|||| |||| |||| |||| ||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
3590771 |
tactgcaatgtaacaggaaacaaaccaattgccaaacttaataataatgtatcaacaaggct |
3590710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 3590708 - 3590634
Alignment:
| Q |
294 |
attacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttc |
368 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||| ||||| |||| |
|
|
| T |
3590708 |
attacctgcactgcttggaagaattggctcaagatatcaggaaatgaccttctaacttgttcctttgaagtgttc |
3590634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 3568870 - 3568817
Alignment:
| Q |
31 |
gttctataaccaaattgctatataatagttggattggatattgaaccggttata |
84 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||| |||| ||| |||||| |
|
|
| T |
3568870 |
gttctaaaaccaaattgctatataataattggattggagattgtacctgttata |
3568817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 263 - 485
Target Start/End: Complemental strand, 1408906 - 1408690
Alignment:
| Q |
263 |
caacaaggcttaatttctttggttgctaattattacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaa |
362 |
Q |
| |
|
|||||||||||||| |||||||| | || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1408906 |
caacaaggcttaatatctttggtggttacaaattacctgcactgcttgggagaattggctcaagatatcaggaattgaccttttaacttgttcctctgaa |
1408807 |
T |
|
| Q |
363 |
gagttcggcttctgcagaccataaccaatatcattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctga |
462 |
Q |
| |
|
| | ||||| | |||| ||| ||||||||||||||||||||| ||||||| ||| || ||||| || ||| |||||||||| |||||| ||| |
|
|
| T |
1408806 |
gtg------ttctgtaaaccaatggcaagatcattttgtccaatatcaattgtgtaaagggccttagagaattcctcattccttggaagaccacttttga |
1408713 |
T |
|
| Q |
463 |
gaggtggttctgtccctataaat |
485 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
1408712 |
aaggtgattctgtccctataaat |
1408690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 294 - 479
Target Start/End: Complemental strand, 1416861 - 1416682
Alignment:
| Q |
294 |
attacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatat |
393 |
Q |
| |
|
||||||| ||||| ||||| ||| | |||||| || |||||||||||||||| ||||| ||||||||||| || || | ||||| | ||| || |
|
|
| T |
1416861 |
attaccttcactgattgggagaaattgctcaatatttcaggaattgacctttgaacttgttcctctgaagtgtat------tgaaaaccatgagcaagat |
1416768 |
T |
|
| Q |
394 |
cattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccct |
479 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| || |||||||| ||| ||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
1416767 |
cattttgtccaatatcaattgtgtaaagggccttagagaaatcctcaggccttggaagaccacttttgagagatggttctgtccct |
1416682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 294 - 479
Target Start/End: Complemental strand, 1412011 - 1411832
Alignment:
| Q |
294 |
attacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatat |
393 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| || |||||||||||||||| ||||| ||| ||||||| || | | | | |||||| ||| || |
|
|
| T |
1412011 |
attaccttcactgcttgggacaattggctcaatatttcaggaattgacctttgaacttgttcttctgaagtgt--gtc----gaaaaccataggcaagat |
1411918 |
T |
|
| Q |
394 |
cattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccct |
479 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| || ||||| || ||| || |||||| |||||| ||||||| ||||| |||||| |
|
|
| T |
1411917 |
cattttgtccaatatcaattgtgtaaagggccttagagaagtcctcaggccctggaagaccacttttgagaggcggttccgtccct |
1411832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 1409299 - 1409169
Alignment:
| Q |
11 |
cataggaatgacaagtattagttctataaccaaattgctatataatagttggattggatattgaaccggttatatctc----tgttggttcaattggttt |
106 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||| ||| || | |||||| |||||| | ||| | |||||||||||||||| |
|
|
| T |
1409299 |
catagtaatgacaagtattagttctaaaaccaaattgctatataatagtcggactgaagattgaa-cggttaaacctccgagtcttggttcaattggttt |
1409201 |
T |
|
| Q |
107 |
tatcgactcaacccatgattgaaccagatgaca |
139 |
Q |
| |
|
|||| | | | ||| ||||||||||||||||| |
|
|
| T |
1409200 |
tatc-agttgaaccacgattgaaccagatgaca |
1409169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 1409118 - 1409071
Alignment:
| Q |
190 |
cggttccacttggttcaatcatactacaatataactggaatcaaacca |
237 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
1409118 |
cggttcaacttggttcaatcatactgcaatataatcggaatcaaacca |
1409071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 479
Target Start/End: Complemental strand, 1421228 - 1421141
Alignment:
| Q |
392 |
atcattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccct |
479 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||| | |||| || ||| ||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
1421228 |
atcatttagtccaatatcaattgtgtaaagggccgtacagaagtcctcaggccttggaagaccacttttgagagatggttctgtccct |
1421141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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