View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20017_high_20 (Length: 256)
Name: NF20017_high_20
Description: NF20017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20017_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 45363779 - 45364020
Alignment:
| Q |
1 |
ggacataattccaagaaggcagaggaatgttcttctaatcaatagtatccccaatcattactaaaacttcccttaaatacaattcctcactaattatatt |
100 |
Q |
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| T |
45363779 |
ggacataattccaagaaggcagaggaatgttcttctaatcaatagtctccccaatcattactaaaacttcccttaaatacaattcctcactaattatatt |
45363878 |
T |
|
| Q |
101 |
agagttcatctctgcatgactcctcctcgagaccatgatttcagattcacttgccatgattgctaactgtattaggtgcttgaattgattgcgccacata |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45363879 |
agagttcatctctgcatgactcctcctccagaccatgatttcagcttcacttgccatgattgctaactgtattaggtgcttgaattgattgcaccacata |
45363978 |
T |
|
| Q |
201 |
atcatttccagtcataacagaagccaagcacgggagtataat |
242 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45363979 |
atcatttccaatcataacagaagccaagcacgggagtataat |
45364020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 45375019 - 45375260
Alignment:
| Q |
1 |
ggacataattccaagaaggcagaggaatgttcttctaatcaatagtatccccaatcattactaaaacttcccttaaatacaattcctcactaattatatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45375019 |
ggacataattccaagaaggcagaggaatgttcttctaatcaatagtctccccaatcattactaaaacttcccttaaatacaattcctcactaattatatt |
45375118 |
T |
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| Q |
101 |
agagttcatctctgcatgactcctcctcgagaccatgatttcagattcacttgccatgattgctaactgtattaggtgcttgaattgattgcgccacata |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45375119 |
agagttcatctctgcatgactcctcctccagaccatgatttcagcttcacttgccatgattgctaactgtattaggtgcttgaattgattgcaccacata |
45375218 |
T |
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| Q |
201 |
atcatttccagtcataacagaagccaagcacgggagtataat |
242 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45375219 |
atcatttccaatcataacagaagccaagcacgggagtataat |
45375260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 45382598 - 45382839
Alignment:
| Q |
1 |
ggacataattccaagaaggcagaggaatgttcttctaatcaatagtatccccaatcattactaaaacttcccttaaatacaattcctcactaattatatt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45382598 |
ggacataattccaagaaggcagaggaatgttcttctaatcaatagtctccccaatcattactaaaacttcccttaaatacaattcctcactaattatatt |
45382697 |
T |
|
| Q |
101 |
agagttcatctctgcatgactcctcctcgagaccatgatttcagattcacttgccatgattgctaactgtattaggtgcttgaattgattgcgccacata |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45382698 |
agagttcatctctgcatgactcctcctccagaccatgatttcagcttcacttgccatgattgctaactgtattaggtgcttgaattgattgcaccacata |
45382797 |
T |
|
| Q |
201 |
atcatttccagtcataacagaagccaagcacgggagtataat |
242 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
45382798 |
atcatttccaatcataacagaagccaagcacgggagtataat |
45382839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 45342044 - 45342136
Alignment:
| Q |
155 |
catgattgctaactgtattaggtgcttgaattgattgcgccacataatcatttccagt-----cataacagaagccaagcacgggagtataat |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| |
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| T |
45342044 |
catgattgctaactgtattaggtgcttgaattgattgcgccacataatcatttccggtcacaacacaacagaagccaagcacgggagtataat |
45342136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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