View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20017_high_4 (Length: 463)

Name: NF20017_high_4
Description: NF20017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20017_high_4
NF20017_high_4
[»] chr2 (1 HSPs)
chr2 (13-446)||(1349557-1349990)
[»] scaffold0475 (1 HSPs)
scaffold0475 (35-97)||(2228-2290)
[»] scaffold0288 (1 HSPs)
scaffold0288 (35-97)||(2113-2175)
[»] chr6 (7 HSPs)
chr6 (35-97)||(4488859-4488921)
chr6 (35-92)||(4265719-4265776)
chr6 (35-97)||(4502955-4503017)
chr6 (35-97)||(4603514-4603576)
chr6 (35-97)||(4612380-4612442)
chr6 (35-92)||(4581423-4581480)
chr6 (35-83)||(4627568-4627616)
[»] chr8 (1 HSPs)
chr8 (27-74)||(20862464-20862511)
[»] chr3 (6 HSPs)
chr3 (27-97)||(1282837-1282907)
chr3 (35-71)||(35759851-35759887)
chr3 (35-71)||(35776276-35776312)
chr3 (35-71)||(35842083-35842119)
chr3 (35-71)||(35854591-35854627)
chr3 (35-71)||(35869200-35869236)


Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 13 - 446
Target Start/End: Original strand, 1349557 - 1349990
Alignment:
Q  13 atacttcacaacaaaggcttctacataacatttgtcaacactgaattcaaccacaaacgcttactcaaatccataggtcctaatgttgtcaattgtttgc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1349557 atacttcacaacaaaggcttctacataacatttgtcaacactgaattcaaccacaaacgcttactcaaatccataggtcctaatgttgtcaattgtttgc 1349656  T
Q  113 aagatttccaatttgaaaccatcccagatggtctccctcccacaaacaacatggatgcaactcaaagcattcctgatctttgtgactctacaagtaaaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1349657 aagatttccaatttgaaaccatcccagatggtctccctcccacaaacaacatggatgcaactcaaagcattcctgatctttgtgactctacaagtaaaaa 1349756  T
Q  213 ctgtttggtaccattttgtaaacttgtatcaaaactcaatgatcctccagttacttgcataatatcagatggtgtcatgtctttcactattcaagcttct 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1349757 ctgtttggtaccattttgtaaacttgtatcaaaactcaatgatcctccagttacttgcataatatcagatggtgtcatgtctttcactattcaagcttct 1349856  T
Q  313 ctgcaatttgggttgcctaatgttctcttttgggctcatagtgcttgtgttttcatgagctacaaacaaatcaagaatctcacggaaagaggcctaacac 412  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1349857 cggcaatttgggttgcctaatgttctcttttgggctcatagtgcttgtgttttcatgagctacaaacaaatcaagaatctcacggaaagaggcctaacac 1349956  T
Q  413 cacttaaaggtatatactgcacagtgcacacctt 446  Q
    ||||||||||||||||||||||||||||||||||    
T  1349957 cacttaaaggtatatactgcacagtgcacacctt 1349990  T

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Target: scaffold0475 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 2290 - 2228
Alignment:
Q  35 acataacatttgtcaacactgaattcaaccacaaacgcttactcaaatccataggtcctaatg 97  Q
    ||||||| |||||||||||||||| ||| || |||||||| |||||||| | |||||||||||    
T  2290 acataacctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatg 2228  T

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Target: scaffold0288 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 2113 - 2175
Alignment:
Q  35 acataacatttgtcaacactgaattcaaccacaaacgcttactcaaatccataggtcctaatg 97  Q
    ||||||| |||||||||||||||| ||| || |||||||| |||||||| | |||||||||||    
T  2113 acataacctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatg 2175  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 4488859 - 4488921
Alignment:
Q  35 acataacatttgtcaacactgaattcaaccacaaacgcttactcaaatccataggtcctaatg 97  Q
    ||||||| |||||||||||||||| ||| ||||||||||| |||||||| | |||||| ||||    
T  4488859 acataacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatg 4488921  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 4265719 - 4265776
Alignment:
Q  35 acataacatttgtcaacactgaattcaaccacaaacgcttactcaaatccataggtcc 92  Q
    ||||||| |||||||||||||||| ||| ||||||||||| |||||||| | ||||||    
T  4265719 acataacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtcc 4265776  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 4502955 - 4503017
Alignment:
Q  35 acataacatttgtcaacactgaattcaaccacaaacgcttactcaaatccataggtcctaatg 97  Q
    ||||||| ||||||||||| |||| ||| ||||||||||| |||||||| | |||||| ||||    
T  4502955 acataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatg 4503017  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 4603576 - 4603514
Alignment:
Q  35 acataacatttgtcaacactgaattcaaccacaaacgcttactcaaatccataggtcctaatg 97  Q
    ||||||| ||||||||||| |||| ||| |||||||| || |||||||| | |||||||||||    
T  4603576 acataacctttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatg 4603514  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 4612380 - 4612442
Alignment:
Q  35 acataacatttgtcaacactgaattcaaccacaaacgcttactcaaatccataggtcctaatg 97  Q
    |||||||||| |||||||| |||| ||| ||||||||||| |||||||| | |||||| ||||    
T  4612380 acataacattcgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatg 4612442  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 4581480 - 4581423
Alignment:
Q  35 acataacatttgtcaacactgaattcaaccacaaacgcttactcaaatccataggtcc 92  Q
    ||||||| ||||||||||| |||| ||| ||||||||||| |||||||| | ||||||    
T  4581480 acataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtcc 4581423  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 4627616 - 4627568
Alignment:
Q  35 acataacatttgtcaacactgaattcaaccacaaacgcttactcaaatc 83  Q
    ||||||| |||||||||||||||| ||| |||||||| || ||||||||    
T  4627616 acataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatc 4627568  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 20862464 - 20862511
Alignment:
Q  27 aggcttctacataacatttgtcaacactgaattcaaccacaaacgctt 74  Q
    |||||| ||||||||||||||||| ||||||| ||| |||||||||||    
T  20862464 aggcttttacataacatttgtcaatactgaatacaatcacaaacgctt 20862511  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 1282907 - 1282837
Alignment:
Q  27 aggcttctacataacatttgtcaacactgaattcaaccacaaacgcttactcaaatccataggtcctaatg 97  Q
    |||||| |||||||| ||||| || ||||||| ||| ||||||||||| |||||||| | |||||| ||||    
T  1282907 aggcttttacataacctttgttaatactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatg 1282837  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 35759887 - 35759851
Alignment:
Q  35 acataacatttgtcaacactgaattcaaccacaaacg 71  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  35759887 acataacctttgtgaacactgaattcaaccacaaacg 35759851  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 35776312 - 35776276
Alignment:
Q  35 acataacatttgtcaacactgaattcaaccacaaacg 71  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  35776312 acataacctttgtgaacactgaattcaaccacaaacg 35776276  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 35842119 - 35842083
Alignment:
Q  35 acataacatttgtcaacactgaattcaaccacaaacg 71  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  35842119 acataacctttgtgaacactgaattcaaccacaaacg 35842083  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 35854627 - 35854591
Alignment:
Q  35 acataacatttgtcaacactgaattcaaccacaaacg 71  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  35854627 acataacctttgtgaacactgaattcaaccacaaacg 35854591  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 35869236 - 35869200
Alignment:
Q  35 acataacatttgtcaacactgaattcaaccacaaacg 71  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  35869236 acataacctttgtgaacactgaattcaaccacaaacg 35869200  T

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