View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20017_high_6 (Length: 446)
Name: NF20017_high_6
Description: NF20017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20017_high_6 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 1338249 - 1337816
Alignment:
| Q |
1 |
catttgttcgcgggacctcctctaagtatgtatatatgtacatcaattttttgtcatcatattttatgtttatttcatctatatcaaagttcttatgtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1338249 |
catttgttcgcgggacctcctctaagtatgtatatatgtacatcaattttttgtcatcatattttatgtttatttcatctatatcaaagttcttatgtat |
1338150 |
T |
|
| Q |
101 |
ctgctgaatacaacaggccatttggtcgactttggtgggacgaaattgtgtccactgttgtaacaagggccgagcctcataatcaggttgttatttgaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1338149 |
ctgctgaatacaacaggccatttggtcgactttggtgggacgaaattgtgtccacggttgtaacaagggccgagcctcataatcaggttgttatttgaag |
1338050 |
T |
|
| Q |
201 |
ttgtgtacattatattttgtaaaactaatgccacttatgttatcctcccattgcaaaacctctttaaaacaatgttgtatttgagaaatgttatcaacct |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1338049 |
ttgtgtacattatattttgtaaaactaatgccacttatgttatcctcccattgcaaaacctctttaaaacaatgttgtatttgagaaatgttatcaacct |
1337950 |
T |
|
| Q |
301 |
taggatgagcatgctagcattttttcaattaaactcatccgaccatgttctttgtttggacttgttgtataagtggaagtacttatttcgatcgttttct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
1337949 |
taggatgagcatgctagcattttttcaattaaactcatctgaccatgttctttgtttggacttgttatataagtggaagtacttatttcgatcgttttct |
1337850 |
T |
|
| Q |
401 |
ttttcatttatgattatgcagttgctcaatccta |
434 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| |
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|
| T |
1337849 |
ttttcatttatgattatgcattttctcaatccta |
1337816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 31940062 - 31939631
Alignment:
| Q |
1 |
catttgttcgcgggacctcctctaagtatgtatatatgtacatcaattttttgtcatcatattttatgtttatttcatctatatcaaagttcttatgtat |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
31940062 |
catttgttcgtgggacctcttctaagtatgtatatatgtacatctattttaggtcatcatattttatgtctatttcatctatatcaaagttcttatgtat |
31939963 |
T |
|
| Q |
101 |
ctgctgaatacaacaggccatttggtcgactttggtgggacgaaattgtgtccactgttgtaacaagggccgagcctcataatcaggttgttatttgaag |
200 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || ||||||| |
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|
| T |
31939962 |
cttctgaacacaacaggccatttggtcgactttggtgggacgaaattgtgtctactgttgtaacaagggctgagcctcataatcaggttattgtttgaag |
31939863 |
T |
|
| Q |
201 |
ttgtgtacattatattttgtaaaactaatgccacttatgttatcctcccattgcaaaacctctttaaaacaatgttgtatttgagaaatgttatcaacct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | || |
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|
| T |
31939862 |
ttgtgtacattatattttgtaaaactaatgccactaatgttatcctcccattgcaaaacctctttaaaacaatgttgtatataagaaatgttattgaact |
31939763 |
T |
|
| Q |
301 |
taggatgagcatgctagcattttttcaattaaactcatccgaccatgttctttgtttggacttgttgtataagtggaagtacttatttcgatcgttttct |
400 |
Q |
| |
|
||||| | |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |||||||| || ||||||| |
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|
| T |
31939762 |
caggattatcatgttagcattttttcaattaaactcatctgaccatgttctttgtttggacttgttgtgcaagtggcagtccttatttcaattgttttct |
31939663 |
T |
|
| Q |
401 |
ttttcatttatgattatgcagttgctcaatcc |
432 |
Q |
| |
|
|||||||||||||||||||| || |||||||| |
|
|
| T |
31939662 |
ttttcatttatgattatgcattttctcaatcc |
31939631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 13536296 - 13536017
Alignment:
| Q |
1 |
catttgttcgcgggacctcctctaagtatgtatatatgtacatcaattttttgtcatcatattttatgtttatttcatctatatcaaagttc--ttatgt |
98 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| |||| | | ||||| |||||||| |||||||||| | ||||| |||||| |||||| |
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|
| T |
13536296 |
catttgttcgtgggacttcctctaagtatgtatatatgcacatta---tcatgtcaacatattttctgtttatttcctttatattaaagtttgtttatgt |
13536200 |
T |
|
| Q |
99 |
atctgctgaatacaacaggccatttggtcgactttggtgggacgaaattgtgtccactgttgtaacaagggccgagcctcataatcaggttgttatttga |
198 |
Q |
| |
|
|| || || | |||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||| ||||| | |
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|
| T |
13536199 |
atatg---aaaataacaggccatttggccgactttggtgggacgaaattgtgtctactgttgtaacgagagccgaacctcataatcaggttattattag- |
13536104 |
T |
|
| Q |
199 |
agttgtgtacattatattttgtaaaactaatgccacttatgttatcctcccattgcaaaacctctttaaaacaatgttgtatttgagaa |
287 |
Q |
| |
|
|| ||| | |||| ||||||||||||||||||||||||||| || |||| |||||||| || |||||| ||||||||||||||||| |
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|
| T |
13536103 |
aggtgttcatattacattttgtaaaactaatgccacttatgtaattgtccctttgcaaaaactgtttaaa--aatgttgtatttgagaa |
13536017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 9390415 - 9390050
Alignment:
| Q |
1 |
catttgttcgcgggacctcctctaagtatgtatatatgtacatcaattttttgtcatcatattttatgtttatttcatctatatcaaagttcttatgtat |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||| |
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|
| T |
9390415 |
catttgttcgtgggacctcttctaagtatgtacatatgtacatctattttaggtcatcatattttatgtctattttatctatatcaaagttctcatgtat |
9390316 |
T |
|
| Q |
101 |
ctgctgaatacaacaggccatttggtcgactttggtgggacgaaattgtgtccactgttgtaacaagggccgagcctcataatcaggttgttatttgaag |
200 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
9390315 |
ctgttgaacacaacaggccatttggtcgactttggtgggacgaaattgtgtctactgttgtaacaagggccgagcctcataatcaggttattgtttgaag |
9390216 |
T |
|
| Q |
201 |
ttgtgtacattatattttgtaaaactaatgccacttatgttatcctcccattgcaaaacctctttaaaacaatgttgtatttgagaaatgttatcaacct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||| |
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|
| T |
9390215 |
ttgtgtacattatattttgtaaaactaatgccacttatgctatcctcccattgcaaaacctctttaaaacaatgttgtatatgaaaaatgttattgacct |
9390116 |
T |
|
| Q |
301 |
taggatgagcatgctagcattttttcaattaaactcatccgaccatgttctttgtttggacttgtt |
366 |
Q |
| |
|
||||| | |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9390115 |
caggattatcatgttagcattttttcaattaaactcatctgaccatgttctttgtttggacttgtt |
9390050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 2 - 276
Target Start/End: Complemental strand, 5640136 - 5639862
Alignment:
| Q |
2 |
atttgttcgcgggacctcctctaagtatgtatatatgtacatcaattttttgtcatcatattttatgtttatttcatctatatcaaagttcttatgtatc |
101 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||| || | || ||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
5640136 |
atttgttcgggggacttcctctaagtatgtatatttgcatatgaatttaatgtcatcatattttatgtttatttcatctatatcatagttcttatttatc |
5640037 |
T |
|
| Q |
102 |
tgctgaatacaacaggccatttggtcgactttggtgggacgaaattgtgtccactgttgtaacaagggccgagcctcataatcaggttgttatttgaagt |
201 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| || ||||| || |||||| || || |||| |
|
|
| T |
5640036 |
tgctgaacacaacaggccatttggtcgactttggtgggacgaaattgtgtccacagttgtgacccgggcggaacctcacaaccaggttatttttctaagt |
5639937 |
T |
|
| Q |
202 |
tgtgtacattatattttgtaaaactaatgccacttatgttatcctcccattgcaaaacctctttaaaacaatgtt |
276 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||| ||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
5639936 |
tgtgtacattatattttgtaaatccaatgccacttatgctatcctcaaattgcaaaacctctttaaagcaatgtt |
5639862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 5639861 - 5639796
Alignment:
| Q |
298 |
ccttaggatgagcatgctagcattttttcaattaaactcatccgaccatgttctttgtttggactt |
363 |
Q |
| |
|
||||||||| | |||| ||||||||||||||||||||||||| | |||||||| ||| ||| |||| |
|
|
| T |
5639861 |
ccttaggattatcatgttagcattttttcaattaaactcatctggccatgttccttgcttgaactt |
5639796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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