View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20017_high_9 (Length: 390)
Name: NF20017_high_9
Description: NF20017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20017_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 13 - 373
Target Start/End: Complemental strand, 32604301 - 32603941
Alignment:
| Q |
13 |
aaaatgtgacgggatatattgtatgaagagtgtaagaaagaaattcattccatactcatcattgaaaactgcacaagataaaggaaaggtctacttgttt |
112 |
Q |
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| T |
32604301 |
aaaatgtgacgggatatattgtatgaagagtgtaagaaagaaattcattccatactcatcattgaaaactgcagaagataaaggaaaggtctacttgttt |
32604202 |
T |
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| Q |
113 |
tgttttggaatgcccataataattataacaaactcaatatattttttgaatactttattcaaaaatagttagaatgcatgaaccggggagatagccatac |
212 |
Q |
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| T |
32604201 |
tgttttggaatgcccataataattataacaaactcaatatattttttgaatactttattcaaaaatagttagaatgcatgaaccggggagatagccatac |
32604102 |
T |
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| Q |
213 |
tctcccgtcctgccaattactcataaataagttttgacatcagcctataataatatgtacaaatagttttgcaacatagtatcannnnnnnaaatctttt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32604101 |
tctcccgtcctgccaattactcataaataagttttgacatcagcctataataatatgtacaaatagttttgcaacatagtatcattttttaaaatctttt |
32604002 |
T |
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| Q |
313 |
aatgtaaacataattattatttgaatcagatgtacattatataactaatgctacatattta |
373 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32604001 |
aatgtaacaataattattatttgaatcagatgtacattatataactaatgctacatattta |
32603941 |
T |
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