View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20017_low_1 (Length: 801)
Name: NF20017_low_1
Description: NF20017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20017_low_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 618; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 18 - 660
Target Start/End: Original strand, 33223853 - 33224496
Alignment:
| Q |
18 |
aaccttgttccgtaagatcttccagagtccttgatttcaatttgattaagaagatcaattgtaaggagaagatttttgtttttagctctgtctataacaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223853 |
aaccttgttccgtaagatcttccagagtccttgatttcaatttgattaagaagatcaattgtaaggagaagatttttgtttttagctctgtctataacaa |
33223952 |
T |
|
| Q |
118 |
atgtaataaactttggtgcatggaaatggaactttaagagattgatgtcaccattaacgtcgtcatataatatcattaatgagaaatgaacttctgataa |
217 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223953 |
atgtcataaactttggtgcatggaaatggaactttaagagattgatgtcaccattaacgtcgtcatataatatcattaatgagaaatgaacttctgataa |
33224052 |
T |
|
| Q |
218 |
acctgcggagtatgacacagaccaagtctcat--ggtccatcatgttcagcaccataagatgtccgcatcatacctatttctccatatattcttatacga |
315 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33224053 |
acctgcggagtatgacacagaccaagtctcatatggtccatcatgttcagcaccataagatgtccgcatcatacctatttctccatatattcttatacga |
33224152 |
T |
|
| Q |
316 |
gcattggttcctacatttattttctgctcatggcgaagaaatcttccattttctttcaggtcatggtgaaaactatttcccattgaatatataatgtttt |
415 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33224153 |
gcattggttcctacatttattttctgctcatg-cgaagaaatcttccattttctttcaggtcatggtgaaaactatttcccattgaatatataatgtttt |
33224251 |
T |
|
| Q |
416 |
cgcaacaacgttaacttaaatatatatttatttttatcgtaaatttaatttgcacaatcatgcaaataattcaatgaacaatgatatttcgacactcaca |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33224252 |
cgcaacaacgttaacttaaatatatatttatttttatcgtaaatttaatttgcacaatcatgcaaataattcaatgaacaatgatatttcgacactcata |
33224351 |
T |
|
| Q |
516 |
atttctcaaaattcattctatacttaaattcatctatatctctcttctcatcacattcccaaaatattacatttttcatcccatctctagtctcatgaaa |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33224352 |
atttctcaaaattcattctatacttaaattcatctatatctctcttctcatcacattcccaaaatattacatttttcatcccatctctagtctcatgaaa |
33224451 |
T |
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| Q |
616 |
tattttcctaatgcaataagcaactccacagccttaaattataat |
660 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33224452 |
tattttcctaatgcaataagcaactccacagccttaaattataat |
33224496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 303 - 770
Target Start/End: Original strand, 33227055 - 33227523
Alignment:
| Q |
303 |
tattcttatacgagcattggttcctacatttattttctgctcatggcgaagaaatcttccattttctttcaggtcatggtgaaaactatttcccattgaa |
402 |
Q |
| |
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||||| |||||||||| |||||| |||| ||||| ||| | ||| ||||||||||||||||| |||| |||||| ||| |||||||||||||||| |
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| T |
33227055 |
tattcctatacgagcaccggttcccacatatatttcctggtaatgattaagaaatcttccatttt---tcagctcatggcgaagactatttcccattgaa |
33227151 |
T |
|
| Q |
403 |
tatataa-tgttttcgcaacaacgttaacttaaatatatatttatttttatcgtaaatttaatttgcacaatcatgcaaa---taattcaatgaacaatg |
498 |
Q |
| |
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||| ||| ||||||| ||||||||||||||||| | | | ||| ||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
33227152 |
tatgtaaatgttttcacaacaacgttaacttaatttttttttt-tttgtatcgtaaatttaattttcacaatcatgcaaaatataattcaatgaacaatg |
33227250 |
T |
|
| Q |
499 |
atatttcgacactcacaatttctcaaaattcattctatacttaaattcatctatatctctcttctcatcacattcccaaaatattacatttttcatccca |
598 |
Q |
| |
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||||||| ||||| |||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||| |
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| T |
33227251 |
atatttcaacacttacaatttctcaacattcattctacacttaaattcatctctatctctcttctcatcacattcccaaaatattacatctatcacccca |
33227350 |
T |
|
| Q |
599 |
tctctagtctcatgaaatattttcctaatgcaataagcaactccacagccttaaattataataggttacataccttgactagaggatacttga-aagcca |
697 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||| ||| || || | |
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| T |
33227351 |
tctctagtctcatgaaatattttcctaataaaatacacaactccacaacctgaaattataataggttacataccttgactagaccataagagaggagact |
33227450 |
T |
|
| Q |
698 |
attagcaaggatcattacatataaaggaaaatattatgccatgtatatgaattcaatggaaggtgacatatat |
770 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |
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|
| T |
33227451 |
tttagcaaggagcattacatataaaggaaaatattatgccatgcatatgaattaaatagaaggtgacatatat |
33227523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 653 - 791
Target Start/End: Original strand, 33225234 - 33225372
Alignment:
| Q |
653 |
attataataggttacataccttgactagaggatacttgaaagccaattagcaaggatcattacatataaaggaaaatattatgccatgtatatgaattca |
752 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33225234 |
attataataggttacataccttgactagaggatacttgaaagccaattagcaagcatcattacatataaaggaaaatattatgccatgtatatgaattca |
33225333 |
T |
|
| Q |
753 |
atggaaggtgacatatatgtgccaacttgctcctctctg |
791 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
33225334 |
atggaaggtgacatatatgtgccaacttgctcctctctg |
33225372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 248
Target Start/End: Original strand, 33226902 - 33227043
Alignment:
| Q |
104 |
tctgtctataacaaatgtaataaactttggtgcatggaaatggaactttaagagattgatgtcaccattaacgtcgtcatataatatcattaatgagaaa |
203 |
Q |
| |
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||||| ||||||||||||||||||| | ||| | ||| ||||||||| |||||||||| |||||| | ||||||||||||| |||||||||| |
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| T |
33226902 |
tctgtgtataacaaatgtaataaacataggtactccaaaactgaactttaatagattgatgtaaccattt---ttgtcatataatatcgttaatgagaat |
33226998 |
T |
|
| Q |
204 |
tgaacttctgataaacctgcggagtatgacacagaccaagtctca |
248 |
Q |
| |
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||||||||| ||| ||||||||||||||| |||||||||||| |
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| T |
33226999 |
caaacttctgaccaacgtgcggagtatgacaccgaccaagtctca |
33227043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 33226819 - 33226872
Alignment:
| Q |
18 |
aaccttgttccgtaagatcttccagagtccttgatttcaatttgattaagaaga |
71 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
33226819 |
aaccttgttccgtaagattttccagagtccttaatttcaattggatcaagaaga |
33226872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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