View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20017_low_11 (Length: 361)
Name: NF20017_low_11
Description: NF20017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20017_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 49511309 - 49511654
Alignment:
| Q |
1 |
ttatcttgtttgacagtgaatataatgttggagattgaatgtgcagagtaaatgtaaaaggtttcgttccatttggggctacctatcattctagttcttc |
100 |
Q |
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| T |
49511309 |
ttatcttgtttgacagtgaatataatgttggagattgaatgtgcagagtaaatgtgaaaggtttcgttccatttggggctacctatcattctagttcttc |
49511408 |
T |
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| Q |
101 |
caactcttgctttgtctaaatcaactgttgcatatagacccatcccaataatctgtgaaatgtttttaaatgttgttaggtgttagaatgtataaaggga |
200 |
Q |
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| T |
49511409 |
caactcttgctttgtctaaatcaactgttgcatatagacccatcccaataatctgtgaaatgtttttaaatgttgttaggtgttagaatgtataaaggga |
49511508 |
T |
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| Q |
201 |
actttatgtgattagaaaaataatgaagtatgttacataattacattacatattatatagtcaacaaggaaataaaataatatgtgaagatatacctctg |
300 |
Q |
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| T |
49511509 |
actttatgtgattagaaaaataatgaagtatgttacataattacattacatattatatagtcaacaaggaaataaaataatatgtgaagatatacctctg |
49511608 |
T |
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| Q |
301 |
gcttgcattgccattgacaccgaaaacaactcttgacttgtgacag |
346 |
Q |
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| T |
49511609 |
gcttgcattgccattgacacagaaaacaactcttgacttgtgacag |
49511654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 49522352 - 49522404
Alignment:
| Q |
82 |
cctatcattctagttcttccaactcttgctttgtctaaatcaactgttgcata |
134 |
Q |
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| T |
49522352 |
cctatcattctggttcgtccaacccttgctttatctaaatcaactgttgcata |
49522404 |
T |
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