View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20017_low_14 (Length: 347)
Name: NF20017_low_14
Description: NF20017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20017_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 103 - 333
Target Start/End: Complemental strand, 7012464 - 7012234
Alignment:
| Q |
103 |
attttcaaacttatttttctaaatgagttcaaactttaatgtgaattgttgaatatagatgtgcaggggacatgcaagtatggaacaagggtggattata |
202 |
Q |
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| T |
7012464 |
attttcaaacttatttttctaaatgagttcaaactttaatgtgaattgttgaatatagatgtgcaggggacatgcaagtatggaacaagggtggattata |
7012365 |
T |
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| Q |
203 |
ttttgggttcatcaaaatcaccatacaaatttgttccagggtcatactcagtaatttcttctaaaggaacttctgatcaccacattgtgaaggtagatat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7012364 |
ttttgggttcatcaaaatcaccatacaaatttgttccagggtcatactcagtaatttcttctaaaggaacttctgatcaccacattgtgaaggtagatat |
7012265 |
T |
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| Q |
303 |
aatgaaagtaaatacttcaactcagaataat |
333 |
Q |
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| T |
7012264 |
aatgaaagtaaatacttcaactcagaataat |
7012234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 7012582 - 7012500
Alignment:
| Q |
1 |
ttcatgaaatcaaaagactatgatgatgcaaaggattatgcaggagaatgtgaacccattgtcatcattgccaaaggccaaag |
83 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7012582 |
ttcatgaaatcaaaagactatgatgatgcaaaggattatgcaggagaatgtgaacccattgtcatcattgccaaaggccaaag |
7012500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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