View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20017_low_18 (Length: 314)
Name: NF20017_low_18
Description: NF20017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20017_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 31597072 - 31597356
Alignment:
| Q |
16 |
cacttctgacactcattataatttcccgtccatttcaactcaaaacccttttctaatgcttggtttacatcattaaccgttgcaattttcgcagcttggg |
115 |
Q |
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| T |
31597072 |
cacttctgacactcactataatttcccgtccatttcaactcaaaacccttttctaatgcttggtttacatcattaaccgttgcaattttcgcagcttggg |
31597171 |
T |
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| Q |
116 |
tgtccaaaatcggaatctcaacaacactcctcggtaaacttgtattgtaattgtataacaaagttactttagacgaagtattaccataacgttgaaagaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31597172 |
tgtccaaaatcggaatctcaacaacactcctcggtaaacttgtattgtaattgtataacaaagttactttagacgaagtattaccataacgttgaaagaa |
31597271 |
T |
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| Q |
216 |
agtgttgttgaatgtgctattcttatgattgtcactcaaggcacatatattactccagtaatcatctcttgcaactctgagtctc |
300 |
Q |
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| T |
31597272 |
agtgttgttgaatgtgctgttcttatgattgtcactcaaggcacatatattactccagtaatcatctcttgcaactctaagtctc |
31597356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 31606177 - 31606264
Alignment:
| Q |
16 |
cacttctgacactcattataatttcccgtccatttcaactcaaaacccttttctaatgcttggtttacatcattaaccgttgcaattt |
103 |
Q |
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| T |
31606177 |
cacttttgacactctccataatttcccgtccatttcaaatcaaaaccgccttgtaatgctttgtttatatcattgagcgttgcaattt |
31606264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 31616113 - 31616169
Alignment:
| Q |
33 |
ataatttcccgtccatttcaactcaaaacccttttctaatgcttggtttacatcatt |
89 |
Q |
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| T |
31616113 |
ataatttcccgtccatttcaaatcaaagccgtcttgtaatgcttggtttatatcatt |
31616169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 31610348 - 31610385
Alignment:
| Q |
267 |
actccagtaatcatctcttgcaactctgagtctctgtg |
304 |
Q |
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| T |
31610348 |
actccagtaatcgtctctggcaactctgagtctctgtg |
31610385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 31609993 - 31610053
Alignment:
| Q |
20 |
tctgacactcattataatttcccgtccatttcaactcaaaacccttttctaatgcttggtt |
80 |
Q |
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| T |
31609993 |
tctgacactctccataattgcctgtccatctcaactcaaaaccgttttttaatgcttggtt |
31610053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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