View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20017_low_19 (Length: 306)
Name: NF20017_low_19
Description: NF20017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20017_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 26665635 - 26665920
Alignment:
| Q |
1 |
gtaaccagtaatgtgagtacagtacgtcaagacatttaaatcaatgtcatagataacattattattactacatgacaattcctttgtacaaaggaacaac |
100 |
Q |
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| T |
26665635 |
gtaaccagtaatgtgag-acagtacgtcaagacatttaaatcaatgtcatagataacattattattactaaatgacaattcctttgtacaaaggaacaag |
26665733 |
T |
|
| Q |
101 |
aaggattgtgacagcagtaaaaataaatggtaacaaatttaaagacaatctaaatggatgcagaaatttcttgtactaaggttgtgctaataccatacac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26665734 |
aaggattgtgacagcagtaaaaataaatggtaacaaatttaaagacaatctaaatggatgcagaaatttcttgtactaaggttgtgcaaataccatacac |
26665833 |
T |
|
| Q |
201 |
ttggtatgtaatgtaaaccttgaaccaatccaacctgaacccaagtaaaagaggagaggaagagcatacttgtctataccagattct |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26665834 |
ttggtatgtaatgtaaaccttgaaccaatccaacctgaacccaagtaaaagaggagaggaagagcatacttgcctataccagattct |
26665920 |
T |
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