View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20017_low_2 (Length: 685)
Name: NF20017_low_2
Description: NF20017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20017_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 7 - 679
Target Start/End: Complemental strand, 56278759 - 56278071
Alignment:
| Q |
7 |
aaaacattgccagatacttaacaagcaaaagtatgcaaagatcaaatggttatgcattgactgaaatactattaataactcatggcagaaatattaattg |
106 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
56278759 |
aaaacattggcagatacttaacaagcaaaagtatgcaaagatcaaatggttatgcattgactgaaatactattaacaactcattgcagaaatattaattg |
56278660 |
T |
|
| Q |
107 |
aaacttgaaaacattgatcaactcaaatttgtccacatatatactaaaatggctagtaagaatatataacttc-------------cacagctatggaat |
193 |
Q |
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| T |
56278659 |
aaacttgaaaacattgatcaactcaaatttgtccacatatatactaaaatggctagtaagaatatataacttcagctcaaaatttccacagctatggaat |
56278560 |
T |
|
| Q |
194 |
ggaaggaaggaa----ccttccaggcaacttagtttctacatatatataaactaaaatggtcccaaaacattcggtgataatccgataataaaagctaat |
289 |
Q |
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| T |
56278559 |
ggaaggaaggaaggaaccttccaggcaacttagtttctacatatatataaactaaaata-tcccaaaacattcggtgataatccgataataaaagctaat |
56278461 |
T |
|
| Q |
290 |
atataggagttagttctatactaaggatcttttagggaaaccaaagtcaaggaatgaggaaatactgtaggatgcgacaaggattgtgggttgagttgta |
389 |
Q |
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| T |
56278460 |
atataggagttagttctatactaaggatcttttagggaaaccaaagtcaaggaatgaggaaatactgtaggatgcgacaaggattgtgggttgagttgta |
56278361 |
T |
|
| Q |
390 |
gaaaggaacaagcatgagcaatcttgtgattcttcatgtcatagatgtataactctgcagaaaccttaatcagcaatttcccatctttgaagccaagagg |
489 |
Q |
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| T |
56278360 |
gaaaggaacaagcatgagcaatcttgtgattcttcatgtcatagatgtataactctgcagaaaccttaatcagcaatttcccatctttgaagccaagagg |
56278261 |
T |
|
| Q |
490 |
attcatccaaggatttgtatcatcactctccaacactctattccttagattcaaaaagaggcgtggatattctgcttcaaaatcctccaaaagtttgcaa |
589 |
Q |
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| T |
56278260 |
attcatccaaggatttgtatcatcactctccaacactctattccttaaattcaaaaagaggcgtggatattctgcttcaaaatcctccaaaagtttgcaa |
56278161 |
T |
|
| Q |
590 |
tgcttaagcagccatttgaagtcaaaataatcttcaagagaatcaagacaccagacatgaagaccttgttctgatacctgaacataatga |
679 |
Q |
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| T |
56278160 |
tgcttaagcacccatttgaagtcaaaataatcttcaagagaatcaagacaccagacatgaagaccttgttctgatacctgaacataatga |
56278071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 7 - 179
Target Start/End: Complemental strand, 46571392 - 46571223
Alignment:
| Q |
7 |
aaaacattgccagatacttaacaagcaaaagtatgcaaagatcaaatggttatgcattgactgaaatactattaataactca-tggcagaaatattaatt |
105 |
Q |
| |
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|||||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||| || |
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| T |
46571392 |
aaaacaatgtcagatatttaacaagcaaaagtatgcaaagatgaaatggttatgcattgactgaaatactattatcaactcattgccagaaatattattt |
46571293 |
T |
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| Q |
106 |
gaaacttgaaaacattgatcaactcaaatttgtccacatatatactaaaatggctagtaagaatatataacttc |
179 |
Q |
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| T |
46571292 |
gaaacttgaaaccattgatcaactgaaatttgtccac----atactaaaatggttagtaagaatatataacttc |
46571223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 15979201 - 15979284
Alignment:
| Q |
92 |
cagaaatattaattgaaacttgaaaacattgatcaactcaaatttgtccacatatatactaaaatggctagtaagaatatataacttc |
179 |
Q |
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| T |
15979201 |
cagaaatattaattgaaacttgaaaacattgatcaactcaaatttctccac----atactaaaatggctagtaagaatatataacttc |
15979284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 19125618 - 19125690
Alignment:
| Q |
92 |
cagaaatattaattgaaacttgaaaacattgatcaactcaaatttgtccacatatatactaaaatggctagtaagaa |
168 |
Q |
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| T |
19125618 |
cagaaatattcattgaaacttgaaaacattgatcaactcaaatttgtccac----atactaaaatggcgagtaagaa |
19125690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 179
Target Start/End: Original strand, 19146607 - 19146637
Alignment:
| Q |
149 |
actaaaatggctagtaagaatatataacttc |
179 |
Q |
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| T |
19146607 |
actaaaatggctagtaagaatatataacttc |
19146637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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