View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20017_low_23 (Length: 250)
Name: NF20017_low_23
Description: NF20017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20017_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 1338520 - 1338282
Alignment:
| Q |
1 |
atattatgtactgttattttatctttgttgctccatgtaaattctaattgtgcttgcttgcctttttagggggcaaacttcagggacctcaagggtgttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1338520 |
atattatgtactgttattttatctttgttgctccatgtaaattctaattgtgcttgcttgcctttttagggggcaaacttcagggacctcaagggtgttc |
1338421 |
T |
|
| Q |
101 |
ttgttaaagaaaataaggtggaatgggacccgtctgttaaaagagtgtatctaaaatctgggaagcccttggtactaatcctgtcttgtcttagggacac |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1338420 |
ttgttaaagaaaataaggtggaatgggacccgtcttttaaaagagtgtatctaaaatctgggaagcccttggtactaatcctgtcttgtcttagggacac |
1338321 |
T |
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| Q |
201 |
atttattttgaagttatttctttgttgaccacaaccttt |
239 |
Q |
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| T |
1338320 |
atttattttgaagttatttctttgttgaccacaaccttt |
1338282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 31940326 - 31940101
Alignment:
| Q |
8 |
gtactgttattttatctttgttgctccatgtaaattctaattgtgcttgcttgcctttttagggggcaaacttcagggacctcaagggtgttcttgttaa |
107 |
Q |
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| T |
31940326 |
gtactgtcattttatctttgttgctctatgtaaattttaattgtgcttgcttgcctttttagggggcaaacttcagggacctcaagggagtgcttgttaa |
31940227 |
T |
|
| Q |
108 |
agaaaataaggtggaatgggacccgtctgttaaaagagtgtatctaaaatctgggaagcccttggtactaatcctgtcttgtcttagggacacatttatt |
207 |
Q |
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| T |
31940226 |
agaaaaaaaggtggaatgggacccctctgttgaaagagtgtatctaaaatctggaaagcctttggtactaatcttgtcttgtcttagggacacatttatt |
31940127 |
T |
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| Q |
208 |
ttgaagttatttctttgttgaccaca |
233 |
Q |
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| T |
31940126 |
ttgaagttagttctttgttgaccaca |
31940101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 13536459 - 13536362
Alignment:
| Q |
112 |
aataaggtggaatgggacccgtctgttaaaagagtgtatctaaaatctgggaagcccttggtactaatcctgtcttgtcttagggacacatttatttt |
209 |
Q |
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| T |
13536459 |
aataaagtggaatgggacccctctgttgaaagacaattactaaaatctggcaagcctttggtattaatctcttgttgtcttagggacacatttatttt |
13536362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 9390651 - 9390448
Alignment:
| Q |
35 |
atgtaaattctaattgtgcttgcttgcctttttagggggcaaacttcagggacctcaagggtgttcttgttaaagaaaataaggtggaatgggacccgtc |
134 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| || |
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| T |
9390651 |
atgtaaattttaattgtgcttgcttgcctttttagggggcaaacttcagggacctcaagggagtgcttgttaaagaaaacaaggtggaatgggacccctc |
9390552 |
T |
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| Q |
135 |
tgttaaaagagtgtatctaaaatctgggaagcccttggtactaatcctgtcttgtcttagggacacatttattttgaagttatttctttgttgaccacaa |
234 |
Q |
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||| |||||||||||||||||||||| ||||| |||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9390551 |
agttgaaagagtgtatctaaaatctggaaagcctttggtactaatcttgacttgtctt-gggacacatttattttgaagttagttctttgttgaccacaa |
9390453 |
T |
|
| Q |
235 |
ccttt |
239 |
Q |
| |
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||||| |
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|
| T |
9390452 |
ccttt |
9390448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 5640407 - 5640178
Alignment:
| Q |
1 |
atattatgtactgttattttatctttgttgctccatgtaaattctaattgtgcttgcttgccttttt-agggggcaaacttcagggacctcaagggtgtt |
99 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
5640407 |
atattatgttctgttattttatctttgttgctccctgtaaattttaattgtgcattcttgccttttttagggggcaaacttcagggacctaaagggtgtg |
5640308 |
T |
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| Q |
100 |
cttgttaaagaaaataaggtggaatgggacccgtctgttaaaagagtgtatctaaaatctgggaagcccttggtactaatcctgtcttgtcttagggaca |
199 |
Q |
| |
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||||| |||||||| || ||||| |||||||| |||||| ||||||||||||| |||||||||||||| |||||||||||| | | ||| ||||| || |
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| T |
5640307 |
cttgtgaaagaaaaaaaagtggagtgggacccctctgttgaaagagtgtatctgaaatctgggaagcctttggtactaatcttctgttgccttagcgatg |
5640208 |
T |
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| Q |
200 |
catttattttgaagttatttctttgttgac |
229 |
Q |
| |
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||||||||||||||||| |||||||||||| |
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| T |
5640207 |
catttattttgaagttagttctttgttgac |
5640178 |
T |
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