View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20017_low_24 (Length: 238)
Name: NF20017_low_24
Description: NF20017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20017_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 37120142 - 37120354
Alignment:
| Q |
17 |
acttaggaggagtttaattattcgttaccttagccataatacttatgagatataaataaatggattagaagaagctttgtttccggaacggtgtattatt |
116 |
Q |
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| T |
37120142 |
acttaggaggagtttaattattcgttaccttagccataatacttatgagatataaataaatggattagaagaagctttgtttccggaacggtgtattatt |
37120241 |
T |
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| Q |
117 |
aaagttgcaggaaaatgcttgactaagtactcatgcaa---acgtatttataagcattagttctctgtggaataatttaaacgcgtggtagaccagtgtg |
213 |
Q |
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| T |
37120242 |
aaagttgcaggaaaatgcttgagtaagtactcatgcaatttacgtatttataggcattagttctttgtggaataatttaaacgcgtggtagaccagtgtg |
37120341 |
T |
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| Q |
214 |
acttcttccactc |
226 |
Q |
| |
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||||||||||||| |
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| T |
37120342 |
acttcttccactc |
37120354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 37127630 - 37127732
Alignment:
| Q |
32 |
aattattcgttaccttagccataatacttatgagatataaataaatggattagaagaagctttgtttccggaacggtgtattattaaagttgcaggaaaa |
131 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||| ||||||||| ||||||| |
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| T |
37127630 |
aattattcattaccttagccataatacttatgagatataaataaatagattagaagaagc----tttccggagtggtgtatgtttaaagttgtaggaaaa |
37127725 |
T |
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| Q |
132 |
tgcttga |
138 |
Q |
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||||||| |
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| T |
37127726 |
tgcttga |
37127732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 1193382 - 1193169
Alignment:
| Q |
17 |
acttaggaggagtttaattattcgttaccttagccataatacttatgagatataaataaatggattagaagaagctttgtttccggaacggtgtattatt |
116 |
Q |
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|||||| ||||||| |||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| || |
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| T |
1193382 |
acttagcaggagttaaattattcattaccttagccgtaatacttatgagatataaataaacggattagaagaagctttgtttccggaatggtgtattgtt |
1193283 |
T |
|
| Q |
117 |
aaagttgcaggaaaatgcttgactaagtactcatgca----aacgtatttataagcattagttctctgtggaataatttaaacgcgtggtagaccagtgt |
212 |
Q |
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||||||| ||||||||||| || || |||||||||| | |||||||| ||||||||||| |||||||||| ||||| ||||||||||| ||||| |
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| T |
1193282 |
aaagttgtaggaaaatgctcgagcaattactcatgcattttactttatttataggcattagttctttgtggaataaattaaatgcgtggtagacaagtgt |
1193183 |
T |
|
| Q |
213 |
gacttcttccactc |
226 |
Q |
| |
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|| ||||||||||| |
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| T |
1193182 |
gatttcttccactc |
1193169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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