View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20017_low_25 (Length: 238)
Name: NF20017_low_25
Description: NF20017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20017_low_25 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 67 - 238
Target Start/End: Original strand, 7012040 - 7012207
Alignment:
| Q |
67 |
gaattgttacacttgattattacttatatcaaatataccatattggtttctatatataaaatcttgattnnnnnnnnnnnnnnnnntctatggaacaagt |
166 |
Q |
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| T |
7012040 |
gaattgttacacttgattattacttatatcaaatataccatattggtttctatatatataatctttat----aaaaaaaaaaaaaatctatggaacaagt |
7012135 |
T |
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| Q |
167 |
agattaggaggtggtgttaattcccatacacctgctgtagaacaaggtggtgttattctcacaaccttcctc |
238 |
Q |
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| T |
7012136 |
agattaggaggtggtgttaattctcatacacctactgtagaacaaggtggtgttattctcacaaccttcctc |
7012207 |
T |
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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 7011942 - 7012013
Alignment:
| Q |
1 |
aaaataaaagaagaattacaatataaa-tattcatatatgtgatttgaaagcaccacaacaatttctgaatt |
71 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7011942 |
aaaataaaagaagaattacaatataaaatattcatatatgtgatttgaaagcaccacaacaatttctgaatt |
7012013 |
T |
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