View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20017_low_4 (Length: 476)

Name: NF20017_low_4
Description: NF20017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20017_low_4
NF20017_low_4
[»] chr3 (76 HSPs)
chr3 (16-312)||(28149205-28149502)
chr3 (367-463)||(28149080-28149176)
chr3 (330-450)||(28184960-28185080)
chr3 (187-308)||(27919794-27919915)
chr3 (326-463)||(28082885-28083022)
chr3 (329-448)||(28054571-28054690)
chr3 (329-448)||(28064996-28065115)
chr3 (187-312)||(8539625-8539750)
chr3 (183-312)||(17744983-17745112)
chr3 (183-312)||(19046303-19046432)
chr3 (176-308)||(28036886-28037018)
chr3 (175-302)||(28083061-28083188)
chr3 (175-312)||(28185241-28185378)
chr3 (210-312)||(28161399-28161501)
chr3 (175-312)||(28135423-28135560)
chr3 (210-302)||(27979930-27980022)
chr3 (156-308)||(28003642-28003794)
chr3 (330-430)||(28161138-28161238)
chr3 (370-461)||(28480584-28480675)
chr3 (370-461)||(28509767-28509858)
chr3 (176-285)||(18079134-18079243)
chr3 (176-312)||(18077048-18077184)
chr3 (210-293)||(28005300-28005383)
chr3 (360-458)||(27919514-27919612)
chr3 (401-463)||(28134783-28134845)
chr3 (176-308)||(27459363-27459496)
chr3 (360-461)||(27979639-27979740)
chr3 (233-300)||(27390661-27390728)
chr3 (182-284)||(26127958-26128060)
chr3 (182-284)||(26178008-26178110)
chr3 (182-312)||(26629103-26629233)
chr3 (246-308)||(28054969-28055031)
chr3 (246-308)||(28065394-28065456)
chr3 (360-451)||(28036610-28036701)
chr3 (182-292)||(11420527-11420637)
chr3 (360-450)||(17745307-17745397)
chr3 (360-450)||(19046627-19046717)
chr3 (210-312)||(27379376-27379478)
chr3 (360-450)||(28003368-28003458)
chr3 (176-294)||(28084514-28084632)
chr3 (377-437)||(28507044-28507104)
chr3 (360-447)||(28151113-28151200)
chr3 (373-463)||(26114053-26114143)
chr3 (211-292)||(26630806-26630887)
chr3 (185-284)||(26139907-26140006)
chr3 (182-280)||(26110964-26111062)
chr3 (182-280)||(26233310-26233408)
chr3 (365-461)||(11420196-11420292)
chr3 (177-253)||(28055905-28055981)
chr3 (177-253)||(28066330-28066406)
chr3 (214-302)||(12147176-12147267)
chr3 (109-180)||(27249877-27249948)
chr3 (190-312)||(28506894-28507017)
chr3 (248-294)||(27350056-27350102)
chr3 (96-157)||(27919936-27919997)
chr3 (82-178)||(27459242-27459338)
chr3 (214-302)||(27348381-27348472)
chr3 (214-302)||(27377721-27377812)
chr3 (235-294)||(27389193-27389252)
chr3 (333-460)||(27459684-27459810)
chr3 (182-233)||(28151344-28151395)
chr3 (182-284)||(26113453-26113558)
chr3 (182-280)||(26205247-26205345)
chr3 (211-284)||(26235777-26235851)
chr3 (326-375)||(28135212-28135261)
chr3 (125-180)||(17744898-17744953)
chr3 (210-253)||(18025075-18025118)
chr3 (125-180)||(19046218-19046273)
chr3 (373-443)||(26128809-26128879)
chr3 (266-312)||(28151284-28151330)
chr3 (185-222)||(27249808-27249845)
chr3 (123-180)||(28037041-28037098)
chr3 (123-167)||(18024979-18025023)
chr3 (337-401)||(18025327-18025391)
chr3 (185-245)||(26129265-26129325)
chr3 (185-245)||(26179321-26179381)
[»] chr7 (2 HSPs)
chr7 (360-460)||(8692895-8692995)
chr7 (214-312)||(8692618-8692716)
[»] scaffold0257 (3 HSPs)
scaffold0257 (367-461)||(18502-18596)
scaffold0257 (210-314)||(18624-18728)
scaffold0257 (102-173)||(18735-18806)
[»] scaffold0043 (2 HSPs)
scaffold0043 (210-294)||(51950-52034)
scaffold0043 (214-293)||(53670-53752)
[»] scaffold1142 (1 HSPs)
scaffold1142 (210-312)||(1503-1605)
[»] chr2 (2 HSPs)
chr2 (210-294)||(22394372-22394456)
chr2 (214-302)||(22392650-22392741)
[»] scaffold1163 (1 HSPs)
scaffold1163 (210-275)||(1-66)
[»] chr4 (2 HSPs)
chr4 (210-249)||(9328789-9328828)
chr4 (210-249)||(9382566-9382605)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 76)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 28149502 - 28149205
Alignment:
Q  16 attcttacaaatc-aattccatggcaattaaattataacaaaaagaaaaatatgacagaaatacctataagcagaagactatgttagtttgaaggctttg 114  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||    
T  28149502 attcttacaaatccaattccattgcaattaaataataacaaaaagaaaaatatgacagcaatacctacaaacagaagactatgttaatttgaaggctttg 28149403  T
Q  115 ttatatataataaactaacctgtgaagatgttttatgcttagaagtagataatggacctaatgatgttgttattgtcttggcattagctgtcgtggttcc 214  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28149402 ttatatataataaactcacctgtgaagatgttttatgcttagaagtagataatggacctaatgatgttgttattgtcttggcattagctgacgtggttcc 28149303  T
Q  215 ttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaagaat 312  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28149302 ttcttcagcacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgttcaaaagaat 28149205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 367 - 463
Target Start/End: Complemental strand, 28149176 - 28149080
Alignment:
Q  367 tttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgttggt 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28149176 tttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggcagtatcagtttctccaagtgaacgttgttggt 28149080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 330 - 450
Target Start/End: Complemental strand, 28185080 - 28184960
Alignment:
Q  330 cacttgaaataaaatatatttcatttagtatttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacg 429  Q
    |||||||||||||||||||||| ||  ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  28185080 cacttgaaataaaatatatttctttcggtatttcatttttagctttatatgcacaacgcggtggtacgacattacatgatttacctgagaaggtttgacg 28184981  T
Q  430 gaagtatcagtttctccaagt 450  Q
    | |||||||| ||||||||||    
T  28184980 gtagtatcaggttctccaagt 28184960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 187 - 308
Target Start/End: Complemental strand, 27919915 - 27919794
Alignment:
Q  187 ttgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcc 286  Q
    ||||||||||||||||||  ||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27919915 ttgtcttggcattagctgatgtgattccttcttcaacacatattttgataccctgcttaaaattaaatggatgttgaagattgtagtataattcaattcc 27919816  T
Q  287 tgcattgacaaagtgttaaaaa 308  Q
    | |||||| |||||||||||||    
T  27919815 tacattgaaaaagtgttaaaaa 27919794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 326 - 463
Target Start/End: Complemental strand, 28083022 - 28082885
Alignment:
Q  326 gaagcacttgaaataaaatatatttcatttagtatttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggttt 425  Q
    |||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||   ||||| |||||| |||||||||||||| |||||||    
T  28083022 gaagcagttgaaataaaatatatttctttcagtatttcatttttagctttatatgcacaatgtattggtatgatattgcatgatttacctgaaaaggttt 28082923  T
Q  426 gacggaagtatcagtttctccaagtgaacgttgttggt 463  Q
    ||||| ||||||||||||||||| |  |||||||||||    
T  28082922 gacggcagtatcagtttctccaactagacgttgttggt 28082885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 329 - 448
Target Start/End: Complemental strand, 28054690 - 28054571
Alignment:
Q  329 gcacttgaaataaaatatatttcatttagtatttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgac 428  Q
    ||||||||||||||||||||||| || ||||||||||||||| |||||||||||| |||| ||||||| ||| |||||||||||||||||||||||||||    
T  28054690 gcacttgaaataaaatatatttctttaagtatttcatttttatctttatatgcacgatgcagtggtacaataatacatgatttacctgagaaggtttgac 28054591  T
Q  429 ggaagtatcagtttctccaa 448  Q
    || ||||||| |||||||||    
T  28054590 ggcagtatcaatttctccaa 28054571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 329 - 448
Target Start/End: Complemental strand, 28065115 - 28064996
Alignment:
Q  329 gcacttgaaataaaatatatttcatttagtatttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgac 428  Q
    ||||||||||||||||||||||| || ||||||||||||||| |||||||||||| |||| ||||||| ||| |||||||||||||||||||||||||||    
T  28065115 gcacttgaaataaaatatatttctttaagtatttcatttttatctttatatgcacgatgcagtggtacaataatacatgatttacctgagaaggtttgac 28065016  T
Q  429 ggaagtatcagtttctccaa 448  Q
    || ||||||| |||||||||    
T  28065015 ggcagtatcaatttctccaa 28064996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 187 - 312
Target Start/End: Original strand, 8539625 - 8539750
Alignment:
Q  187 ttgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcc 286  Q
    |||| |||||||||||||  || ||||||||||||||||||||||| | |||||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  8539625 ttgtattggcattagctgatgtagttccttcttcaacacttatttcaacaccctgcttaaaattaaattaatgtttaggattgtagtataattcaattcc 8539724  T
Q  287 tgcattgacaaagtgttaaaaagaat 312  Q
    |||||||  |||||||||||||||||    
T  8539725 tgcattggaaaagtgttaaaaagaat 8539750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 183 - 312
Target Start/End: Original strand, 17744983 - 17745112
Alignment:
Q  183 gttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaa 282  Q
    |||||| |||||||||||||||  ||||||||||||||||||||||||||| ||||||||||| |||||||  |||||||||||||||||| ||||||||    
T  17744983 gttattctcttggcattagctgatgtggttccttcttcaacacttatttcgttaccctgcttataattaaacagatgtttaagattgtagtttaattcaa 17745082  T
Q  283 ttcctgcattgacaaagtgttaaaaagaat 312  Q
    |||||  |||||||||| || |||||||||    
T  17745083 ttcctttattgacaaagagtgaaaaagaat 17745112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 183 - 312
Target Start/End: Original strand, 19046303 - 19046432
Alignment:
Q  183 gttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaa 282  Q
    |||||| |||||||||||||||  ||||||||||||||||||||||||||| ||||||||||| |||||||  |||||||||||||||||| ||||||||    
T  19046303 gttattctcttggcattagctgatgtggttccttcttcaacacttatttcgttaccctgcttataattaaacagatgtttaagattgtagtttaattcaa 19046402  T
Q  283 ttcctgcattgacaaagtgttaaaaagaat 312  Q
    |||||  |||||||||| || |||||||||    
T  19046403 ttcctttattgacaaagagtgaaaaagaat 19046432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 28037018 - 28036886
Alignment:
Q  176 tgatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtat 275  Q
    ||||| ||||||||| ||| || ||||||  || |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28037018 tgatgatgttattgtattgtcagtagctgatgttgttccttctaaaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtat 28036919  T
Q  276 aattcaattcctgcattgacaaagtgttaaaaa 308  Q
    |||||||||||| |||||| || |||| |||||    
T  28036918 aattcaattcctacattgaaaaggtgtcaaaaa 28036886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 175 - 302
Target Start/End: Complemental strand, 28083188 - 28083061
Alignment:
Q  175 atgatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagta 274  Q
    |||||| |||| || |||||||||||||||  || |||||||||||||||||||||||  || |||||||||||||| |  |||||||||||||||||||    
T  28083188 atgatgctgttgttctcttggcattagctgatgtagttccttcttcaacacttatttcactaacctgcttaaaattagaaagatgtttaagattgtagta 28083089  T
Q  275 taattcaattcctgcattgacaaagtgt 302  Q
    ||||||||||||||||||||||||||||    
T  28083088 taattcaattcctgcattgacaaagtgt 28083061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 175 - 312
Target Start/End: Complemental strand, 28185378 - 28185241
Alignment:
Q  175 atgatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagta 274  Q
    ||||||| ||| || |||||||||||| ||  || |||||||||| ||||||||||||| || ||||||||||||||||  |||||||||||||||||||    
T  28185378 atgatgtcgttcttctcttggcattagatgaagtagttccttcttgaacacttatttcgctaacctgcttaaaattaaaaagatgtttaagattgtagta 28185279  T
Q  275 taattcaattcctgcattgacaaagtgttaaaaagaat 312  Q
    ||| ||||||||||||| |||||||||| |||||||||    
T  28185278 taagtcaattcctgcatagacaaagtgtcaaaaagaat 28185241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 28161501 - 28161399
Alignment:
Q  210 gttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaag 309  Q
    |||||||||||||||||||||||| || ||||||||||||||||  |||||||||||||||||||||| ||||||||||||| |||||||||| ||||||    
T  28161501 gttccttcttcaacacttatttcgctaacctgcttaaaattaaaaagatgtttaagattgtagtataagtcaattcctgcatagacaaagtgtcaaaaag 28161402  T
Q  310 aat 312  Q
    |||    
T  28161401 aat 28161399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 175 - 312
Target Start/End: Complemental strand, 28135560 - 28135423
Alignment:
Q  175 atgatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagta 274  Q
    |||||| |||| || |||||||||||||||  || |||||||||||||||||||||||  || ||||||||||||| ||  ||| |||||||||||||||    
T  28135560 atgatgctgttgttctcttggcattagctgatgtagttccttcttcaacacttatttcactaacctgcttaaaatttaaaagatttttaagattgtagta 28135461  T
Q  275 taattcaattcctgcattgacaaagtgttaaaaagaat 312  Q
    |||||||| ||||||||||||||||||| |||| ||||    
T  28135460 taattcaactcctgcattgacaaagtgtcaaaatgaat 28135423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 210 - 302
Target Start/End: Complemental strand, 27980022 - 27979930
Alignment:
Q  210 gttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgt 302  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||| |||||||    
T  27980022 gttccttcttcaacacttatctcgataccctgcttaaaattaaaaggatgtttgagattgtagtataactcaattcctgcattgaaaaagtgt 27979930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 156 - 308
Target Start/End: Complemental strand, 28003794 - 28003642
Alignment:
Q  156 gaagtagataatggacctaatgatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatg 255  Q
    |||||||||||  | |||  ||||| | |||||||||||||||||||||  ||| |||| |||||||||||| |||| ||||||||||||||||||||||    
T  28003794 gaagtagataaatggcctggtgatgattttattgtcttggcattagctgatgtgattccatcttcaacacttttttcaataccctgcttaaaattaaatg 28003695  T
Q  256 gatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaa 308  Q
    |||||||||| |  | |||||||||||||||| |||||| ||||||| |||||    
T  28003694 gatgtttaagttgatggtataattcaattcctacattgaaaaagtgtcaaaaa 28003642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 330 - 430
Target Start/End: Complemental strand, 28161238 - 28161138
Alignment:
Q  330 cacttgaaataaaatatatttcatttagtatttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacg 429  Q
    ||||||||||||||||| |||| ||  ||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||    
T  28161238 cacttgaaataaaatatgtttctttcggtatttcatttttagctttatatgcacaacgcggtgttacgacattacatgatttacctgagaaggtttgacg 28161139  T
Q  430 g 430  Q
    |    
T  28161138 g 28161138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 370 - 461
Target Start/End: Original strand, 28480584 - 28480675
Alignment:
Q  370 agctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgttg 461  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||  |||||||||    
T  28480584 agctttttatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacgggagtatcggcttctccaagtagacgttgttg 28480675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 370 - 461
Target Start/End: Original strand, 28509767 - 28509858
Alignment:
Q  370 agctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgttg 461  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||| | ||||||||||  |||||||||    
T  28509767 agctttatatgcacaatgcggtggtacgatattacttgatttacctgagaaggtttgacggcagaatcggcttctccaagtagacgttgttg 28509858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 285
Target Start/End: Original strand, 18079134 - 18079243
Alignment:
Q  176 tgatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtat 275  Q
    ||||| ||||||||||||||||||||| |  |  ||||||| |||||||||||||||| || |||||||||||||| | |||||||||||| ||||||||    
T  18079134 tgatgatgttattgtcttggcattagccgatgaagttcctttttcaacacttatttcgttaacctgcttaaaattagaaggatgtttaagactgtagtat 18079233  T
Q  276 aattcaattc 285  Q
    ||||||||||    
T  18079234 aattcaattc 18079243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 176 - 312
Target Start/End: Original strand, 18077048 - 18077184
Alignment:
Q  176 tgatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtat 275  Q
    ||||| ||||||||||||||||||||| |  |  | ||| | |||||||||||||||| |  |||||||||||| ||| |||||||||||||||||||||    
T  18077048 tgatgatgttattgtcttggcattagccgatgacggtcccttttcaacacttatttcgttgacctgcttaaaataaaaaggatgtttaagattgtagtat 18077147  T
Q  276 aattcaattcctgcattgacaaagtgttaaaaagaat 312  Q
    |||||||||| ||| |||| |||| || |||||||||    
T  18077148 aattcaattcttgctttgaaaaagagtcaaaaagaat 18077184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 210 - 293
Target Start/End: Complemental strand, 28005383 - 28005300
Alignment:
Q  210 gttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattg 293  Q
    |||||||||||||||||| | ||||||||||||||||||||| | |||||||| |||||||||||||||||||||||| |||||    
T  28005383 gttccttcttcaacacttttctcgataccctgcttaaaattagaaggatgtttgagattgtagtataattcaattcctacattg 28005300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 360 - 458
Target Start/End: Complemental strand, 27919612 - 27919514
Alignment:
Q  360 tttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttg 458  Q
    |||| ||||||||||||||| ||||||| |||||||| ||||||||| |||| | |||||||||||||||| ||||||| |||||||||||| ||||||    
T  27919612 tttcttttttagctttatattcacaatgaggtggtactatattacattattttcttgagaaggtttgacggtagtatcaatttctccaagtggacgttg 27919514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 401 - 463
Target Start/End: Complemental strand, 28134845 - 28134783
Alignment:
Q  401 ttacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgttggt 463  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28134845 ttacacgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgttggt 28134783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 308
Target Start/End: Original strand, 27459363 - 27459496
Alignment:
Q  176 tgatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaat-taaatggatgtttaagattgtagta 274  Q
    ||||| ||||||| |||||||||||||||  ||||||||||||||||| | || |||||| |||||||||||||  ||||||| ||||||||||||||||    
T  27459363 tgatggtgttattatcttggcattagctgatgtggttccttcttcaactcgtaattcgatgccctgcttaaaataaaaatggaagtttaagattgtagta 27459462  T
Q  275 taattcaattcctgcattgacaaagtgttaaaaa 308  Q
     || ||||||| | |||||| |||| || |||||    
T  27459463 caagtcaattctttcattgaaaaagagtaaaaaa 27459496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 360 - 461
Target Start/End: Complemental strand, 27979740 - 27979639
Alignment:
Q  360 tttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgt 459  Q
    |||| ||||||||||||||| ||||||| |||||||| ||||||||| |||| |  ||||||||||||||| || ||||||||||||||||| |||||||    
T  27979740 tttcttttttagctttatattcacaatgaggtggtactatattacattattttctggagaaggtttgacggtagcatcagtttctccaagtggacgttgt 27979641  T
Q  460 tg 461  Q
    ||    
T  27979640 tg 27979639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 27390661 - 27390728
Alignment:
Q  233 gataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagt 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||    
T  27390661 gataccctgcttaaaattaaaaggatgtttaagattgtagtataatttaattcctgcattgaaaaagt 27390728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 182 - 284
Target Start/End: Original strand, 26127958 - 26128060
Alignment:
Q  182 tgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattca 281  Q
    ||||||||||||||||||| |||  |  ||||||||||||||| |||||| |||||||||||||||  ||||  ||||||||||||||||| ||||||||    
T  26127958 tgttattgtcttggcattatctgatgcagttccttcttcaacatttatttggataccctgcttaaatgtaaaatgatgtttaagattgtaggataattca 26128057  T
Q  282 att 284  Q
    |||    
T  26128058 att 26128060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 182 - 284
Target Start/End: Original strand, 26178008 - 26178110
Alignment:
Q  182 tgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattca 281  Q
    ||||||||||||||||||| |||  |  ||||||||||||||| |||||| |||||||||||||||  ||||  ||||||||||||||||| ||||||||    
T  26178008 tgttattgtcttggcattatctgatgcagttccttcttcaacatttatttggataccctgcttaaatgtaaaatgatgtttaagattgtaggataattca 26178107  T
Q  282 att 284  Q
    |||    
T  26178108 att 26178110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 182 - 312
Target Start/End: Complemental strand, 26629233 - 26629103
Alignment:
Q  182 tgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattca 281  Q
    |||||||| ||||||||||||||  ||| ||||||||||||| ||||| ||||||||||||||||| ||||| |||| ||| || | || ||||| ||||    
T  26629233 tgttattggcttggcattagctgatgtgtttccttcttcaacgcttatctcgataccctgcttaaatttaaaaggatatttgagttggttgtatagttca 26629134  T
Q  282 attcctgcattgacaaagtgttaaaaagaat 312  Q
    | | ||||||||| ||||||| |||| ||||    
T  26629133 agttctgcattgaaaaagtgtcaaaacgaat 26629103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 28055031 - 28054969
Alignment:
Q  246 aaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaa 308  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28055031 aaattaaaaagatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaa 28054969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 28065456 - 28065394
Alignment:
Q  246 aaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaa 308  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28065456 aaattaaaaagatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaa 28065394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 451
Target Start/End: Complemental strand, 28036701 - 28036610
Alignment:
Q  360 tttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtg 451  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| | |||| |  |||||| |||||||| || |||||||||||||||||    
T  28036701 tttcatttttagctttatatgcacaatgaggtggtactatattacgttattttctggagaagctttgacggtagcatcagtttctccaagtg 28036610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 182 - 292
Target Start/End: Complemental strand, 11420637 - 11420527
Alignment:
Q  182 tgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattca 281  Q
    ||||||||| ||||||||||| |  | |||||||||||| ||||||||||  |||||||||||||||||||||| ||||||||| |  | |||||||| |    
T  11420637 tgttattgttttggcattagccgatgaggttccttcttcgacacttattttaataccctgcttaaaattaaatgcatgtttaagttgatggtataattaa 11420538  T
Q  282 attcctgcatt 292  Q
    ||| |||||||    
T  11420537 atttctgcatt 11420527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 360 - 450
Target Start/End: Original strand, 17745307 - 17745397
Alignment:
Q  360 tttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagt 450  Q
    ||||||||||||  ||||||  |||||| |||||||| ||||||||| |||| |||||||||||||||||| || ||||||||||||||||    
T  17745307 tttcatttttagtcttatataaacaatgaggtggtactatattacattattttcctgagaaggtttgacggtagcatcagtttctccaagt 17745397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 360 - 450
Target Start/End: Original strand, 19046627 - 19046717
Alignment:
Q  360 tttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagt 450  Q
    ||||||||||||  ||||||  |||||| |||||||| ||||||||| |||| |||||||||||||||||| || ||||||||||||||||    
T  19046627 tttcatttttagtcttatataaacaatgaggtggtactatattacattattttcctgagaaggtttgacggtagcatcagtttctccaagt 19046717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 27379478 - 27379376
Alignment:
Q  210 gttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaag 309  Q
    ||||||||||||  |||||| ||  ||||||||| || |||||| |||||||||||||||||||||||||||||| ||||||||| || |||| ||| ||    
T  27379478 gttccttcttcagaacttatctcattaccctgctaaatattaaaaggatgtttaagattgtagtataattcaattactgcattgaaaatgtgtcaaacag 27379379  T
Q  310 aat 312  Q
    |||    
T  27379378 aat 27379376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 360 - 450
Target Start/End: Complemental strand, 28003458 - 28003368
Alignment:
Q  360 tttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagt 450  Q
    |||| ||||||| ||||||||||| ||| |||||||| ||||||||| |||| | |||||||||||||||| || ||||||||||||||||    
T  28003458 tttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaagt 28003368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 176 - 294
Target Start/End: Complemental strand, 28084632 - 28084514
Alignment:
Q  176 tgatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtat 275  Q
    ||||| ||||||||| ||| ||| || ||  || ||||||||||||| |||||| |  |||||||||| || |||||| ||||| |||||||||||||||    
T  28084632 tgatgatgttattgttttgtcataagttgatgtagttccttcttcaaaacttatcttcataccctgctaaatattaaaaggatgcttaagattgtagtat 28084533  T
Q  276 aattcaattcctgcattga 294  Q
     ||||||||||||||||||    
T  28084532 gattcaattcctgcattga 28084514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 377 - 437
Target Start/End: Original strand, 28507044 - 28507104
Alignment:
Q  377 tatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatc 437  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  28507044 tatgcacaatgtggtggtacgatattacatgatttaccggagaaggtttgacggcagtatc 28507104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 447
Target Start/End: Complemental strand, 28151200 - 28151113
Alignment:
Q  360 tttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctcca 447  Q
    |||| ||||||| ||||||||||||||| |||||||| ||||||||| |||| | |||||||||||||||| || |||| ||||||||    
T  28151200 tttcttttttagatttatatgcacaatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcaatttctcca 28151113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 463
Target Start/End: Original strand, 26114053 - 26114143
Alignment:
Q  373 tttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgttggt 463  Q
    ||||||||||||||| | |||||| ||||||||| || | | ||||||||||||| || |||||||||||||||||||| | |||||||||    
T  26114053 tttatatgcacaatgagatggtactatattacattatcttcttgagaaggtttgatggtagtatcagtttctccaagtggatgttgttggt 26114143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 211 - 292
Target Start/End: Complemental strand, 26630887 - 26630806
Alignment:
Q  211 ttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcatt 292  Q
    ||||||||||||||||||| |||||| |||||||||||||| | ||||  ||| | ||||| ||||||||||||||||||||    
T  26630887 ttccttcttcaacacttatctcgataacctgcttaaaattataaggatacttaggtttgtaatataattcaattcctgcatt 26630806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 185 - 284
Target Start/End: Original strand, 26139907 - 26140006
Alignment:
Q  185 tattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaatt 284  Q
    |||||||||||||||| |||  ||  |||||||||||||| |||| | ||||||||||||| |  ||||  |||||||||||||||||||||||| ||||    
T  26139907 tattgtcttggcattaactgatgtatttccttcttcaacatttatctggataccctgcttatatgtaaaacgatgtttaagattgtagtataattaaatt 26140006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 280
Target Start/End: Original strand, 26110964 - 26111062
Alignment:
Q  182 tgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattc 280  Q
    ||||||| |||||||||||||||  ||  |||||||||||||  |||| |||||||||||||||||  ||||  |||| || |||||||||||||||||    
T  26110964 tgttattttcttggcattagctgatgtatttccttcttcaacgtttatctcgataccctgcttaaatgtaaaacgatgctttagattgtagtataattc 26111062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 280
Target Start/End: Original strand, 26233310 - 26233408
Alignment:
Q  182 tgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattc 280  Q
    ||||||| |||||||||||||||  ||  |||||||||||||  |||| |||||||||||||||||  ||||  |||| || |||||||||||||||||    
T  26233310 tgttattttcttggcattagctgatgtatttccttcttcaacgtttatctcgataccctgcttaaatgtaaaatgatgctttagattgtagtataattc 26233408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 365 - 461
Target Start/End: Complemental strand, 11420292 - 11420196
Alignment:
Q  365 tttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgttg 461  Q
    ||||||| ||||||||||||||| | |||||| |||||||   |||| ||||  |||||||||||| || ||||||||| ||||||| |||||||||    
T  11420292 tttttagttttatatgcacaatgagatggtactatattactgtattttcctgcaaaggtttgacggtagcatcagtttcaccaagtggacgttgttg 11420196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 177 - 253
Target Start/End: Complemental strand, 28055981 - 28055905
Alignment:
Q  177 gatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaa 253  Q
    ||||| ||| || |||||||||||| ||| || |||||||||| ||||||||||||| || ||||||||||||||||    
T  28055981 gatgtcgttcttctcttggcattagatgttgtagttccttcttgaacacttatttcgctaacctgcttaaaattaaa 28055905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 177 - 253
Target Start/End: Complemental strand, 28066406 - 28066330
Alignment:
Q  177 gatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaa 253  Q
    ||||| ||| || |||||||||||| ||| || |||||||||| ||||||||||||| || ||||||||||||||||    
T  28066406 gatgtcgttcttctcttggcattagatgttgtagttccttcttgaacacttatttcgctaacctgcttaaaattaaa 28066330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 302
Target Start/End: Complemental strand, 12147267 - 12147176
Alignment:
Q  214 cttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtag----tataattcaattcctgcattgacaaagtgt 302  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||||||| || ||||||    |||||| ||||||||||||||  |||||||    
T  12147267 cttcttcaacagttatctcgataccctgcttaaaattaaa-ggatgtttcagtttgtagtatatataatacaattcctgcattggaaaagtgt 12147176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 180
Target Start/End: Complemental strand, 27249948 - 27249877
Alignment:
Q  109 gctttgttatatataataaactaacctgtgaagatgttttatgcttagaagtagataatggacctaatgatg 180  Q
    ||||||||| ||  |||||||| |||||||||| |||||||||||||||||||  |||| ||||||||||||    
T  27249948 gctttgttacatgaaataaactcacctgtgaagttgttttatgcttagaagtatctaattgacctaatgatg 27249877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 312
Target Start/End: Original strand, 28506894 - 28507017
Alignment:
Q  190 tcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgt-agtataattcaattcctg 288  Q
    |||||||||||||||  || |  |||| ||| |||||||||||  || |||||||||||||| | |||||||||| | | | |||||||||||| |||||    
T  28506894 tcttggcattagctgatgtagcacctttttcgacacttatttcactaacctgcttaaaattacaaggatgtttaaaaatattagtataattcaactcctg 28506993  T
Q  289 cattgacaaagtgttaaaaagaat 312  Q
      |||||||||||| |||||||||    
T  28506994 gcttgacaaagtgtcaaaaagaat 28507017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 27350102 - 27350056
Alignment:
Q  248 attaaatggatgtttaagattgtagtataattcaattcctgcattga 294  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||    
T  27350102 attaaaaggatgtttaagattgtagtataattcaattactgcattga 27350056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 27919997 - 27919936
Alignment:
Q  96 tgttagtttgaaggctttgttatatataataaactaacctgtgaagatgttttatgcttaga 157  Q
    ||||| |||||||||||| ||| ||| |||||||| |||||||||| |||||||||||||||    
T  27919997 tgttaatttgaaggctttattaaataaaataaactgacctgtgaagttgttttatgcttaga 27919936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 27459242 - 27459338
Alignment:
Q  82 taagcagaagactatgttagtttgaaggctttgttatatataataaactaacctgtgaagatgttttatgcttagaagtagataatggacctaatga 178  Q
    |||||||||||| || ||| ||| |  ||||||||| ||   ||||||| |||||||||| |||||||||||||||||||  |||| ||||||||||    
T  27459242 taagcagaagaccattttaattttacagctttgttacatgacataaactcacctgtgaagttgttttatgcttagaagtatctaattgacctaatga 27459338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 302
Target Start/End: Complemental strand, 27348472 - 27348381
Alignment:
Q  214 cttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtag----tataattcaattcctgcattgacaaagtgt 302  Q
    ||||||||||| |||| |||| |||||||||||||||||| |||||||| || ||||||    |||||||||||| ||||||||  |||||||    
T  27348472 cttcttcaacagttatctcgacaccctgcttaaaattaaa-ggatgtttcagtttgtagtaaatataattcaattactgcattggaaaagtgt 27348381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 302
Target Start/End: Complemental strand, 27377812 - 27377721
Alignment:
Q  214 cttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtag----tataattcaattcctgcattgacaaagtgt 302  Q
    ||||||||||| |||| || |||||||||||||||||||| |||||||| ||  |||||    |||||||||||||||||||||  |||||||    
T  27377812 cttcttcaacagttatctcaataccctgcttaaaattaaa-ggatgtttcagtctgtagtatatataattcaattcctgcattggaaaagtgt 27377721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 27389193 - 27389252
Alignment:
Q  235 taccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattga 294  Q
    ||||||| | || |||||| |||||||| |||||||||||||||| ||||||||||||||    
T  27389193 taccctgttaaatattaaaaggatgtttcagattgtagtataattgaattcctgcattga 27389252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 460
Target Start/End: Original strand, 27459684 - 27459810
Alignment:
Q  333 ttgaaataaaatatatttcatttagtatttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaa 432  Q
    ||||| |||||| |||||| |||| | |||| | |||| ||||| || ||||||  |||||||  ||||||||| |||| |||||||||||||||||  |    
T  27459684 ttgaagtaaaatttatttcttttaatgtttcttatttatcttta-atacacaataaggtggtattatattacattattttcctgagaaggtttgacgcta 27459782  T
Q  433 gtatcagtttctccaagtgaacgttgtt 460  Q
    | |||||||||| |||||| || |||||    
T  27459783 gcatcagtttctgcaagtggacattgtt 27459810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 28151395 - 28151344
Alignment:
Q  182 tgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcg 233  Q
    |||| ||||||||||||||||||  || ||||||||||||||||||||||||    
T  28151395 tgtttttgtcttggcattagctgatgtagttccttcttcaacacttatttcg 28151344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 284
Target Start/End: Original strand, 26113453 - 26113558
Alignment:
Q  182 tgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaat-taaatggatgtttaagattg--tagtataat 278  Q
    ||||||| |||||||||| ||||   |  ||||||||||| || |||| | |||||||||||| |||| ||||| ||||||||||||||  |||||||||    
T  26113453 tgttattttcttggcattggctgatatatttccttcttcagcatttatatggataccctgctttaaatgtaaattgatgtttaagattgtatagtataat 26113552  T
Q  279 tcaatt 284  Q
    ||||||    
T  26113553 tcaatt 26113558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #63
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 280
Target Start/End: Original strand, 26205247 - 26205345
Alignment:
Q  182 tgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattc 280  Q
    ||||||| | ||||||||||||   ||  |||||||||||||  |||| |||||||||||||||||  ||||  |||| || |||||||||||||||||    
T  26205247 tgttattttattggcattagcttctgtatttccttcttcaacgtttatctcgataccctgcttaaatgtaaaatgatgctttagattgtagtataattc 26205345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #64
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 26235777 - 26235851
Alignment:
Q  211 ttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgttt-aagattgtagtataattcaatt 284  Q
    ||||||||||||||  ||| | |||||||||||||||  ||||  ||||||| ||||||||||||||||||||||    
T  26235777 ttccttcttcaacatatatctggataccctgcttaaatgtaaaatgatgtttaaagattgtagtataattcaatt 26235851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #65
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 28135261 - 28135212
Alignment:
Q  326 gaagcacttgaaataaaatatatttcatttagtatttcatttttagcttt 375  Q
    ||||||||||||||||||| | |||| |||||||||||| ||||||||||    
T  28135261 gaagcacttgaaataaaatctttttcttttagtatttcacttttagcttt 28135212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #66
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 17744898 - 17744953
Alignment:
Q  125 taaactaacctgtgaagatgttttatgcttagaagtagataatggacctaatgatg 180  Q
    |||||| ||||||||||  ||||||||||||||||||| |||| ||| ||||||||    
T  17744898 taaactcacctgtgaagtcgttttatgcttagaagtagctaattgacttaatgatg 17744953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #67
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 18025075 - 18025118
Alignment:
Q  210 gttccttcttcaacacttatttcgataccctgcttaaaattaaa 253  Q
    |||||||||||| || |||| |||||||||||||||||||||||    
T  18025075 gttccttcttcagcagttatctcgataccctgcttaaaattaaa 18025118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #68
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 19046218 - 19046273
Alignment:
Q  125 taaactaacctgtgaagatgttttatgcttagaagtagataatggacctaatgatg 180  Q
    |||||| ||||||||||  ||||||||||||||||||| |||| ||| ||||||||    
T  19046218 taaactcacctgtgaagtcgttttatgcttagaagtagctaattgacttaatgatg 19046273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #69
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 443
Target Start/End: Original strand, 26128809 - 26128879
Alignment:
Q  373 tttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttc 443  Q
    ||||| ||||| ||| | |||||| ||||||||| || | ||||||||||||||| || ||||||||||||    
T  26128809 tttatttgcacgatgagatggtactatattacattatcttcctgagaaggtttgatggtagtatcagtttc 26128879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #70
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 28151330 - 28151284
Alignment:
Q  266 attgtagtataattcaattcctgcattgacaaagtgttaaaaagaat 312  Q
    ||||||||||||||||||| ||| | ||||||||||| |||||||||    
T  28151330 attgtagtataattcaatttctgtactgacaaagtgtgaaaaagaat 28151284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #71
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 27249845 - 27249808
Alignment:
Q  185 tattgtcttggcattagctgtcgtggttccttcttcaa 222  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  27249845 tattgtcttggcattagctgatgtggttccttcttcaa 27249808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #72
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 28037098 - 28037041
Alignment:
Q  123 aataaactaacctgtgaagatgttttatgcttagaagtagataatggacctaatgatg 180  Q
    |||||||| || ||||||| |||| ||||||||||| ||| |||| ||||||||||||    
T  28037098 aataaactcacatgtgaagttgttctatgcttagaaataggtaattgacctaatgatg 28037041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #73
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 18024979 - 18025023
Alignment:
Q  123 aataaactaacctgtgaagatgttttatgcttagaagtagataat 167  Q
    |||||||| |||||||||| |||| ||||||||||||||| ||||    
T  18024979 aataaactcacctgtgaagttgttatatgcttagaagtagctaat 18025023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #74
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 401
Target Start/End: Original strand, 18025327 - 18025391
Alignment:
Q  337 aataaaatatatttcatttagtatttcatttttagctttatatgcacaatgcggtggtacgatat 401  Q
    ||||||||| ||||  || | |||||||||||||||||||||||||  || ||||||||| ||||    
T  18025327 aataaaataaattttcttaaatatttcatttttagctttatatgcaagattcggtggtactatat 18025391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #75
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 26129265 - 26129325
Alignment:
Q  185 tattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgctta 245  Q
    ||||||||| ||||||||||  |  ||||||||||||||| |||| | |||||||||||||    
T  26129265 tattgtcttagcattagctgatgcagttccttcttcaacatttatctggataccctgctta 26129325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #76
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 26179321 - 26179381
Alignment:
Q  185 tattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgctta 245  Q
    |||||||||||||||| |||  |  ||||||||||||||| |||| | |||||||||||||    
T  26179321 tattgtcttggcattaactgatgcagttccttcttcaacatttatctggataccctgctta 26179381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 360 - 460
Target Start/End: Original strand, 8692895 - 8692995
Alignment:
Q  360 tttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgt 459  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| |||||||    
T  8692895 tttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttgccggcaatatcagtttctccaagtggacgttgt 8692994  T
Q  460 t 460  Q
    |    
T  8692995 t 8692995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 312
Target Start/End: Original strand, 8692618 - 8692716
Alignment:
Q  214 cttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaagaat 312  Q
    |||||||||||||| ||||| || |||| |||||||||||  |||||||||||||| ||||||||||||||| | |||||||||| ||| |||||||||    
T  8692618 cttcttcaacacttgtttcgctaacctgattaaaattaaaaagatgtttaagattgcagtataattcaattctttcattgacaaaatgtcaaaaagaat 8692716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 367 - 461
Target Start/End: Complemental strand, 18596 - 18502
Alignment:
Q  367 tttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgttg 461  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||    
T  18596 tttagctttatatgcacaatgcggttgtaggatattacatgatttacctgagaaggtttgacggcaatatcagtttctccaagtggacgttgttg 18502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 210 - 314
Target Start/End: Complemental strand, 18728 - 18624
Alignment:
Q  210 gttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaag 309  Q
    ||||||| |||||||||||||||  || ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18728 gttcctttttcaacacttatttcactaacctgcttaaaattgaaaagatgtttaagattgtagtataattcaattcctgcattgacaaagtgtcaaaaag 18629  T
Q  310 aatgc 314  Q
    |||||    
T  18628 aatgc 18624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 18806 - 18735
Alignment:
Q  102 tttgaaggctttgttatatataataaactaacctgtgaagatgttttatgcttagaagtagataatggacct 173  Q
    |||||||||||||||| ||| |||| ||| ||||||||||||||||| | |||||||||| |||||||||||    
T  18806 tttgaaggctttgttaaataaaatatactcacctgtgaagatgttttctccttagaagtacataatggacct 18735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 51950 - 52034
Alignment:
Q  210 gttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattga 294  Q
    ||||||||||||| |||||| ||| ||||||||| || |||||| |||||||||||||||||||||||||||||| |||||||||    
T  51950 gttccttcttcaaaacttatctcgctaccctgctaaatattaaaaggatgtttaagattgtagtataattcaattactgcattga 52034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 214 - 293
Target Start/End: Original strand, 53670 - 53752
Alignment:
Q  214 cttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtag----tataattcaattcctgcattg 293  Q
    ||||||||||| |||| |||| |||||||||||||||||| |||||||| || ||||||    |||||||||||||||||||||    
T  53670 cttcttcaacagttatctcgacaccctgcttaaaattaaa-ggatgtttcagtttgtagtatatataattcaattcctgcattg 53752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 1605 - 1503
Alignment:
Q  210 gttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaag 309  Q
    ||||||||||||||||| || ||| ||||||||| || | |||| | |||||||||||||||||||| ||||||||||||||||| || | || ||||||    
T  1605 gttccttcttcaacactcatctcgttaccctgctaaacaataaaagaatgtttaagattgtagtatatttcaattcctgcattgaaaaggcgtcaaaaag 1506  T
Q  310 aat 312  Q
    |||    
T  1505 aat 1503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 22394456 - 22394372
Alignment:
Q  210 gttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattga 294  Q
    ||||||||||||| |||||| ||  ||||||||| || |||||| | |||||||||||||||||||||||||||| |||||||||    
T  22394456 gttccttcttcaaaacttatctcattaccctgctaaacattaaaagcatgtttaagattgtagtataattcaattactgcattga 22394372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 302
Target Start/End: Complemental strand, 22392741 - 22392650
Alignment:
Q  214 cttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtag----tataattcaattcctgcattgacaaagtgt 302  Q
    ||||||||||| |||| |||| |||||||||||| ||||| |||||||| || ||||||    |||||| ||||||||||||||  |||||||    
T  22392741 cttcttcaacagttatctcgacaccctgcttaaacttaaa-ggatgtttcagtttgtagtatatataatacaattcctgcattggaaaagtgt 22392650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 66 - 1
Alignment:
Q  210 gttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtat 275  Q
    ||||||||||||| |||||| ||| ||||||||| || |||||| |||||||||||||||||||||    
T  66 gttccttcttcaaaacttatctcgctaccctgctaaatattaaaaggatgtttaagattgtagtat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 9328789 - 9328828
Alignment:
Q  210 gttccttcttcaacacttatttcgataccctgcttaaaat 249  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  9328789 gttccttcttcaacacttatttcgctaacctgcttaaaat 9328828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 9382566 - 9382605
Alignment:
Q  210 gttccttcttcaacacttatttcgataccctgcttaaaat 249  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  9382566 gttccttcttcaacacttatttcgctaacctgcttaaaat 9382605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University