View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20017_low_8 (Length: 437)
Name: NF20017_low_8
Description: NF20017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20017_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Original strand, 34145095 - 34145504
Alignment:
| Q |
17 |
atcaggaaaggcgagaacagattcaacgacctgaggaccgaggtatttggccagttcgttcttcacactcttgagctccgtttgagcttcattcaaccta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34145095 |
atcaggaaaggcgagaacagattcaacgacctgaggaccgaggtatttggccagttcgttcttcacactcttgagctccgtttgagcttcattcaaccta |
34145194 |
T |
|
| Q |
117 |
ctttgaaggtcatttgctggacccgcacaaccatggatagggtccctcaaccaggcatcagcctcatacaccaaggattcaacagcttgttcatgatgtg |
216 |
Q |
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| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34145195 |
ccttgaaggtcatttgctggacccgcacagccatggatagggtccctcaaccaggcatcagcttcatacaccaaggattcaacagcttgttcatgatgtg |
34145294 |
T |
|
| Q |
217 |
aaacatctagttttttcaacagattagtcacatttctcttcccaaacaccgagtgtaccttgatgaaacgctccgggttgtcctttggaaagtaaggagc |
316 |
Q |
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||||||| | |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34145295 |
aaacatccaattttttcaacagattagtcacatttctcattccaaacaccgagtgtaccttgatgaaacgctccgggttgtcctttggaaagtaaggagc |
34145394 |
T |
|
| Q |
317 |
taagacacaggtagggtggcacttcctatgaagatgcttgcaagctgcacatgggcgaataatctctctatccataactgcacattaaattagcaaattc |
416 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34145395 |
taagacacaggtaaggtggcacttcctatggagatgcttgcaagctgcacatgggcgaataatctctctatccattgctgcacattaaattagcaaattc |
34145494 |
T |
|
| Q |
417 |
aattattcat |
426 |
Q |
| |
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|||||||||| |
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| T |
34145495 |
aattattcat |
34145504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 17 - 421
Target Start/End: Original strand, 34155435 - 34155842
Alignment:
| Q |
17 |
atcaggaaaggcgagaacagattcaacgacctgaggaccgaggtatttggccagttcgttcttcacactcttgagctccgtttgagcttcattcaaccta |
116 |
Q |
| |
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|||||||||| |||||||| ||||||| | ||||||| ||||||||||||||||||||||||||||||||| || ||| ||||| |||||||||||||| |
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| T |
34155435 |
atcaggaaagccgagaacaaattcaacaatctgaggattgaggtatttggccagttcgttcttcacactctttagttccatttgaacttcattcaaccta |
34155534 |
T |
|
| Q |
117 |
ctttgaaggtcatttgctggacccgcacaaccatggatagggtccctcaaccaggcatcagcctcatacaccaaggattcaacagcttgttcatgatgtg |
216 |
Q |
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| ||||||||| |||||||||||||||||||||| || ||||||||||||| ||| |||||||||||||| || ||||||| ||||||||| ||||||| |
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| T |
34155535 |
cgttgaaggtcctttgctggacccgcacaaccatagactgggtccctcaacctggcctcagcctcatacacgaatgattcaatagcttgttcgtgatgtg |
34155634 |
T |
|
| Q |
217 |
aaacatctagttttttcaacagattagtcacatttctcttcccaaacaccgagtgtaccttgatgaaacgctccgggttgtcctttggaaagtaaggagc |
316 |
Q |
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|| |||| | ||||||||||| ||| | |||||| |||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
34155635 |
aagcatcaacttttttcaacatattcgacacattgttctttccaaacacagagtgtaccttgatgaaacgctctgggttgtcaggtggaaagtaaggagc |
34155734 |
T |
|
| Q |
317 |
taagacacaggtagggtggcacttcctatgaagatgcttgcaagctgcacatgggcgaataatctctctatcc---ataactgcacattaaattagcaaa |
413 |
Q |
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| | ||||| | | || ||||| | | | ||||||||||| ||||| || ||||||||||||||||| || || |||||||||||||||| |||| |
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| T |
34155735 |
aaggtcacagcttgagtcgcactcctgacggagatgcttgcatgctgcgcacgggcgaataatctctcttgccattattactgcacattaaattaacaaa |
34155834 |
T |
|
| Q |
414 |
ttcaatta |
421 |
Q |
| |
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|||||||| |
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|
| T |
34155835 |
ttcaatta |
34155842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 34140881 - 34140954
Alignment:
| Q |
348 |
agatgcttgcaagctgcacatgggcgaataatctctctatccataactgcacattaaattagcaaattcaatta |
421 |
Q |
| |
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||||||||||| ||||||| |||||||||||||| | |||||||||||||||||||||| ||||||||||| |
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| T |
34140881 |
agatgcttgcacactgcacacaggcgaataatctcttttgccataactgcacattaaattaggaaattcaatta |
34140954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 34134509 - 34134582
Alignment:
| Q |
349 |
gatgcttgcaagctgcacatgggcgaataatctctctatccataactgcacattaaat-tagcaaattcaatta |
421 |
Q |
| |
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|||||||||| |||||||| ||||||||||||||| ||||||||| | ||||||| || |||||||||||| |
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| T |
34134509 |
gatgcttgcacgctgcacacgggcgaataatctcttctgccataactgtaaattaaatataacaaattcaatta |
34134582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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