View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20017_low_9 (Length: 391)
Name: NF20017_low_9
Description: NF20017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20017_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 16277035 - 16277394
Alignment:
| Q |
1 |
gtttatccaagaaaaagagatatgaagatagaagatattaggtaaaattaattaatttaactctttcacaaatatctgtctgaatatacaggcttattca |
100 |
Q |
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| T |
16277035 |
gtttatccaagaaaaagagatatgaagatagaagatattaggtaaaattaattaatttaactctttcacaaatatatgtctgaatatacaggcttattca |
16277134 |
T |
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| Q |
101 |
atatagaaagaaaataatatactctgttggagacaagacatgtcttttcttggttggtagttaaagtcaagcccgttgattttggttgtattttatgcca |
200 |
Q |
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| T |
16277135 |
atatagaaagaaaataatatactctgttggagacaagacatgtcttttcttggttggtagttaaggtcaagcccgttgattttggttgtattttatgcca |
16277234 |
T |
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| Q |
201 |
tattcaacatgtttttaaccaaattccaaagcaaaaccaaaagatatagatttttaaactgaaattgaataagacaagaaacatattctataatagtctt |
300 |
Q |
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| T |
16277235 |
tattcaacatgtttttaaccaaattccaaagcaaaaccaaaagatatagatttttaaactgaaattgaataagacaagaaacagattctataatagtctt |
16277334 |
T |
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| Q |
301 |
tacaaaccaatattttgttcctacaattcataccaattcatgatgagagatatgaaagaaaacatacctg |
370 |
Q |
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|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16277335 |
tataaaccaatattttgttccta----------caattcatgatgagagatatgaaagaaaacatacctg |
16277394 |
T |
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