View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20018_high_1 (Length: 720)

Name: NF20018_high_1
Description: NF20018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20018_high_1
NF20018_high_1
[»] chr5 (29 HSPs)
chr5 (183-704)||(1163360-1163881)
chr5 (260-655)||(1849904-1850287)
chr5 (183-499)||(3299652-3299965)
chr5 (183-499)||(3392545-3392858)
chr5 (513-655)||(3299472-3299617)
chr5 (513-655)||(3392365-3392510)
chr5 (16-125)||(1163193-1163302)
chr5 (502-654)||(40418223-40418375)
chr5 (503-655)||(39879753-39879905)
chr5 (502-655)||(38987644-38987797)
chr5 (503-655)||(39726357-39726509)
chr5 (342-499)||(40418417-40418571)
chr5 (503-652)||(39399801-39399950)
chr5 (516-655)||(39168785-39168924)
chr5 (47-111)||(3300024-3300088)
chr5 (47-111)||(3392917-3392981)
chr5 (372-462)||(38987873-38987963)
chr5 (372-462)||(39726592-39726682)
chr5 (372-462)||(39879988-39880078)
chr5 (57-111)||(1850390-1850444)
chr5 (19-100)||(38988246-38988336)
chr5 (16-100)||(40418824-40418917)
chr5 (387-444)||(39169041-39169098)
chr5 (192-287)||(38988048-38988140)
chr5 (198-287)||(40418626-40418712)
chr5 (192-287)||(39726767-39726863)
chr5 (64-100)||(39880369-39880405)
chr5 (396-438)||(39400042-39400084)
chr5 (215-287)||(39880163-39880232)
[»] chr4 (6 HSPs)
chr4 (513-648)||(25912295-25912430)
chr4 (379-499)||(25912122-25912239)
chr4 (516-581)||(44444772-44444837)
chr4 (16-100)||(25911728-25911821)
chr4 (192-262)||(44444435-44444505)
chr4 (192-287)||(25911942-25912034)


Alignment Details
Target: chr5 (Bit Score: 501; Significance: 0; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 183 - 704
Target Start/End: Original strand, 1163360 - 1163881
Alignment:
Q  183 gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctcc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163360 gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctcc 1163459  T
Q  283 aatggnnnnnnnggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggtagattgctctttggtcgaagaggagtt 382  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163460 aatggaaaaaaaggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggtagattgctctttggtcgaagaggagtt 1163559  T
Q  383 tagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaat 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163560 tagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaat 1163659  T
Q  483 cttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagtg 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163660 cttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagtg 1163759  T
Q  583 tgattattatttccaatatctttgacacgagcaactatggcattagctaaacgatattttttggcagcagcagtataagtagcaaaagcatcaccatctt 682  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163760 tgattattatttccaatatctttgacacgagcaactatggcattagctaaacgatattttttggcagcagcagtataagtagcaaaagcatcaccatctt 1163859  T
Q  683 catcatgttcatccttaaaaac 704  Q
    ||||||||||||||||||||||    
T  1163860 catcatgttcatccttaaaaac 1163881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 260 - 655
Target Start/End: Complemental strand, 1850287 - 1849904
Alignment:
Q  260 atcatccatcaagcaaatcctccaatggnnnnnnnggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggtagat 359  Q
    ||||||||||||||||||||||||||||       |||||   ||| |||||||||| | ||||||||||||||||||||| ||||||||||||||        
T  1850287 atcatccatcaagcaaatcctccaatggataaaaaggtcttctaaaaggggatctgatgggtgggccagatggatggcagttggttggatttcggt---- 1850192  T
Q  360 tgctctttggtcgaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctacca 459  Q
               ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  1850191 -----------cgaagaggagtttagggtcttgttgtaaatcttttaagaagagttgataatcagattcccacttatcctgaacaggaataactctacca 1850103  T
Q  460 ttctcctctttagcaaaactaatcttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaa 559  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  1850102 ttctcctctttagcaaaactaatcttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatggtcaccaggttttaaaatacgactaa 1850003  T
Q  560 gatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgacacgagcaactatggcattagctaaacgatattttttggcagcagcag 655  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1850002 gatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaactatggcattagctaaacgatattttttggcagcagcag 1849904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 183 - 499
Target Start/End: Complemental strand, 3299965 - 3299652
Alignment:
Q  183 gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctcc 282  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   |||||||||||||||||    
T  3299965 gcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatc---catcaagcaaatcctcc 3299869  T
Q  283 aatggnnnnnnnggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggtagattgctctttggtcgaagaggagtt 382  Q
    |||||       |||||   |||||||||| ||| |  || | || |||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  3299868 aatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtt 3299769  T
Q  383 tagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaat 482  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||  ||| |||||||    
T  3299768 tagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaat 3299669  T
Q  483 cttggtaatcaaaatgg 499  Q
     ||||| ||||||||||    
T  3299668 tttggtgatcaaaatgg 3299652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 183 - 499
Target Start/End: Complemental strand, 3392858 - 3392545
Alignment:
Q  183 gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctcc 282  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   |||||||||||||||||    
T  3392858 gcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatc---catcaagcaaatcctcc 3392762  T
Q  283 aatggnnnnnnnggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggtagattgctctttggtcgaagaggagtt 382  Q
    |||||       |||||   |||||||||| ||| |  || | || |||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  3392761 aatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtt 3392662  T
Q  383 tagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaat 482  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||  ||| |||||||    
T  3392661 tagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaat 3392562  T
Q  483 cttggtaatcaaaatgg 499  Q
     ||||| ||||||||||    
T  3392561 tttggtgatcaaaatgg 3392545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 513 - 655
Target Start/End: Complemental strand, 3299617 - 3299472
Alignment:
Q  513 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||| |||    
T  3299617 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 3299518  T
Q  610 cgagcaactatggcattagctaaacgatattttttggcagcagcag 655  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||    
T  3299517 cgagcaaccatggcatcagctaaacgatattttttggcagcagcag 3299472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 513 - 655
Target Start/End: Complemental strand, 3392510 - 3392365
Alignment:
Q  513 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||| |||    
T  3392510 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 3392411  T
Q  610 cgagcaactatggcattagctaaacgatattttttggcagcagcag 655  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||    
T  3392410 cgagcaaccatggcatcagctaaacgatattttttggcagcagcag 3392365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 1163193 - 1163302
Alignment:
Q  16 atgacaggcatggtttgggaagcacgatcaacacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaagtaagttgtt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163193 atgacaggcatggtttgggaagcacgatcaacacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaagtaagttgtt 1163292  T
Q  116 cttgttatcg 125  Q
    ||||||||||    
T  1163293 cttgttatcg 1163302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 502 - 654
Target Start/End: Complemental strand, 40418375 - 40418223
Alignment:
Q  502 tctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaata 600  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||    
T  40418375 tctcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaata 40418277  T
Q  601 tctttgacacgagcaactatggcattagctaaacgatattttttggcagcagca 654  Q
    ||||| ||||||||||| |  |||| |||||||| |||||||||||||||||||    
T  40418276 tctttcacacgagcaaccacagcatcagctaaacaatattttttggcagcagca 40418223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 503 - 655
Target Start/End: Complemental strand, 39879905 - 39879753
Alignment:
Q  503 ctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatat 601  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| |||    
T  39879905 ctcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccagtat 39879807  T
Q  602 ctttgacacgagcaactatggcattagctaaacgatattttttggcagcagcag 655  Q
    |||| ||||||||||| |  |||| ||||||||||||||||||||| |||||||    
T  39879806 ctttcacacgagcaaccacagcatcagctaaacgatattttttggcggcagcag 39879753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 502 - 655
Target Start/End: Complemental strand, 38987797 - 38987644
Alignment:
Q  502 tctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaata 600  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| | |||||||||| ||    
T  38987797 tctcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg-tcattatttccagta 38987699  T
Q  601 tctttgacacgagcaactatggcattagctaaacgatattttttggcagcagcag 655  Q
    ||||| ||||||||||| |  |||| ||||||||||||||||||||| |||||||    
T  38987698 tctttcacacgagcaaccacagcatcagctaaacgatattttttggcggcagcag 38987644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 503 - 655
Target Start/End: Complemental strand, 39726509 - 39726357
Alignment:
Q  503 ctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatat 601  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| | |||||||||| |||    
T  39726509 ctcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg-tcattatttccagtat 39726411  T
Q  602 ctttgacacgagcaactatggcattagctaaacgatattttttggcagcagcag 655  Q
    |||| ||||||||||| |  |||| ||||||||||||||||||||| |||||||    
T  39726410 ctttcacacgagcaaccacagcatcagctaaacgatattttttggcggcagcag 39726357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 342 - 499
Target Start/End: Complemental strand, 40418571 - 40418417
Alignment:
Q  342 ggttggatttcggtagattgctctttggtcgaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctga 441  Q
    |||| ||| |||||||  |||||||  || |||||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||||| |||    
T  40418571 ggtttgatctcggtaggctgctcttacgttgaagaggagtttagtgtcttgttgtagatcattgaagaagagttgataatcagattcccacttatcatga 40418472  T
Q  442 acaggaacaactctaccattctcctctttagcaaaactaatcttggtaatcaaaatgg 499  Q
    | || |||||||||||||||   |||||  ||| ||||||||||||| ||||||||||    
T  40418471 agagcaacaactctaccatt---ctcttcggcataactaatcttggtgatcaaaatgg 40418417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 503 - 652
Target Start/End: Complemental strand, 39399950 - 39399801
Alignment:
Q  503 ctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatat 601  Q
    ||||| ||| || ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| |||| | ||||||||||| ||    
T  39399950 ctcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaaaat 39399852  T
Q  602 ctttgacacgagcaactatggcattagctaaacgatattttttggcagcag 652  Q
     ||  ||||||||||| | ||||| ||||||||| |||||||| |||||||    
T  39399851 tttccacacgagcaaccacggcatcagctaaacggtattttttagcagcag 39399801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 516 - 655
Target Start/End: Complemental strand, 39168924 - 39168785
Alignment:
Q  516 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgagc 614  Q
    ||||||||||||||||| |||||||| |||||||||| |||| ||||||||  |||||||||||| |||| | ||||||||||| |||||  ||||||||    
T  39168924 gtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg-tcattatttccaaaatcttccacacgagc 39168826  T
Q  615 aactatggcattagctaaacgatattttttggcagcagcag 655  Q
    ||| | ||||| |||||| ||||||||||||||||||||||    
T  39168825 aaccacggcatcagctaaccgatattttttggcagcagcag 39168785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 3300088 - 3300024
Alignment:
Q  47 cacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaagtaagt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3300088 cacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagt 3300024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 3392981 - 3392917
Alignment:
Q  47 cacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaagtaagt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3392981 cacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagt 3392917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 372 - 462
Target Start/End: Complemental strand, 38987963 - 38987873
Alignment:
Q  372 gaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattc 462  Q
    |||||| |||| |||||||||||||||||| || ||||||||||||||| ||||||||||||||||||  |||| ||||||||||||||||    
T  38987963 gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattc 38987873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 372 - 462
Target Start/End: Complemental strand, 39726682 - 39726592
Alignment:
Q  372 gaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattc 462  Q
    |||||| |||| |||||||||||||||||| || ||||||||||||||| ||||||||||||||||||  |||| ||||||||||||||||    
T  39726682 gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattc 39726592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 372 - 462
Target Start/End: Complemental strand, 39880078 - 39879988
Alignment:
Q  372 gaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattc 462  Q
    ||||| |||||||| || |||||||||||| || ||||||||||||||| ||||||||||||||||||  |||| ||||||||||||||||    
T  39880078 gaagatgagtttagtgttttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattc 39879988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 1850444 - 1850390
Alignment:
Q  57 ttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaagtaagt 111  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1850444 ttgttctaataaacataaatatcaaacagaaattgtaaattgcaacaaagtaagt 1850390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 38988336 - 38988246
Alignment:
Q  19 acaggcatggtttgggaagcacgatcaacacacataacttgttct---------aataaacataaatatcaaacagaaattgcaaattgca 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||         |||||||||||||||||||||||||||||||| ||||    
T  38988336 acaggcatggtttgggaagcaagatcaacacacataacttgttcttgtaatcggaataaacataaatatcaaacagaaattgcaaactgca 38988246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 40418917 - 40418824
Alignment:
Q  16 atgacaggcatggtttgggaagcacgatcaacacacataacttgttct---------aataaacataaatatcaaacagaaattgcaaattgca 100  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||         |||||||||||||||||||||||||||||||| ||||    
T  40418917 atgacaggcatggtttgtgaagcacgatcaacacacgtaacttgttcttgtaatcggaataaacataaatatcaaacagaaattgcaaactgca 40418824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 387 - 444
Target Start/End: Complemental strand, 39169098 - 39169041
Alignment:
Q  387 gtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaaca 444  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||| ||| ||||    
T  39169098 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttaccctcaaca 39169041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 192 - 287
Target Start/End: Complemental strand, 38988140 - 38988048
Alignment:
Q  192 ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctccaatgg 287  Q
    ||||| ||||||||||||  ||||||||||||| | ||||||| |||||||||||| || | |||   ||||||| |||||||| |||||||||||    
T  38988140 ttgttgttgttattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtgactag---atcatccgtcaagcaagtcctccaatgg 38988048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 40418712 - 40418626
Alignment:
Q  198 ttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctccaatgg 287  Q
    ||||||||||||  |||||||||| || | ||||||| |||||||||||| |||| |||   ||||||| |||||||| |||||||||||    
T  40418712 ttgttattggaacaaacaaaacattaacaaaagtgatttttgtttaagctagtaactag---atcatccgtcaagcaagtcctccaatgg 40418626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 192 - 287
Target Start/End: Complemental strand, 39726863 - 39726767
Alignment:
Q  192 ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagat-catcatccatcaagcaaatcctccaatgg 287  Q
    ||||| || |||||||||  ||||||||||||| | | ||||| |||||||||||| |||| ||| |  ||||||| |||||||| |||||||||||    
T  39726863 ttgttgttattattggaacaaacaaaacatcaacaaaggtgatttttgtttaagctagtaactagctagatcatccgtcaagcaagtcctccaatgg 39726767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 39880405 - 39880369
Alignment:
Q  64 aataaacataaatatcaaacagaaattgcaaattgca 100  Q
    |||||||||||||||||||||||||||||||| ||||    
T  39880405 aataaacataaatatcaaacagaaattgcaaactgca 39880369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 438
Target Start/End: Complemental strand, 39400084 - 39400042
Alignment:
Q  396 tagatcttttaagaagagttgataaccagattcccacttatcc 438  Q
    |||||||| |||||||||||||||| |||||| ||||||||||    
T  39400084 tagatcttctaagaagagttgataatcagattgccacttatcc 39400042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 215 - 287
Target Start/End: Complemental strand, 39880232 - 39880163
Alignment:
Q  215 aaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctccaatgg 287  Q
    |||||||||| | ||||||| |||||||||||| |||| |||   ||||||| |||||||| |||||||||||    
T  39880232 aaaacatcaacaaaagtgatttttgtttaagctagtaactag---atcatccgtcaagcaagtcctccaatgg 39880163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 4e-40; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 513 - 648
Target Start/End: Original strand, 25912295 - 25912430
Alignment:
Q  513 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacg 611  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| |||||    
T  25912295 caggtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaatatctttcacacg 25912393  T
Q  612 agcaactatggcattagctaaacgatattttttggca 648  Q
    |||||| |   ||| ||||||||||||||||||||||    
T  25912394 agcaaccacatcatcagctaaacgatattttttggca 25912430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 379 - 499
Target Start/End: Original strand, 25912122 - 25912239
Alignment:
Q  379 agtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaac 478  Q
    |||||||||||||| |||||||  |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||   |||||  ||| |||    
T  25912122 agtttagggtcttgctgtagataatttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccatt---ctcttcggcataac 25912218  T
Q  479 taatcttggtaatcaaaatgg 499  Q
    |||||||||| ||||||||||    
T  25912219 taatcttggtgatcaaaatgg 25912239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 516 - 581
Target Start/End: Original strand, 44444772 - 44444837
Alignment:
Q  516 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagt 581  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||    
T  44444772 gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagt 44444837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 25911728 - 25911821
Alignment:
Q  16 atgacaggcatggtttgggaagcacgatcaacacacataacttgttct---------aataaacataaatatcaaacagaaattgcaaattgca 100  Q
    ||||||| |||||||||||||||| ||||||||||| |||||||||||         ||||||||||| |||||||||||||||||||| ||||    
T  25911728 atgacagacatggtttgggaagcatgatcaacacacgtaacttgttcttgtaatcggaataaacataagtatcaaacagaaattgcaaactgca 25911821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 44444435 - 44444505
Alignment:
Q  192 ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatc 262  Q
    ||||||| |||||||||   ||||||||||||| | ||||||| ||||||||||||||||| |||||||||    
T  44444435 ttgttttcgttattggagtaaacaaaacatcaacaaaagtgatttttgtttaagcttgtaactagatcatc 44444505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 192 - 287
Target Start/End: Original strand, 25911942 - 25912034
Alignment:
Q  192 ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctccaatgg 287  Q
    ||||| || |||||||||  ||||||||||||| | ||||||| |||||||||||| |||| |||   ||||||| |||||||| |||||||||||    
T  25911942 ttgttgttattattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtaactag---atcatccgtcaagcaagtcctccaatgg 25912034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University