View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20018_high_2 (Length: 355)
Name: NF20018_high_2
Description: NF20018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20018_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 340
Target Start/End: Original strand, 32987187 - 32987514
Alignment:
| Q |
13 |
aatatatcatcctcgcttcgattagcatacacaacatgcaattcagttagatcttctgggtcttttagaattgcttgaaccacttggtaaattggtgtta |
112 |
Q |
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| T |
32987187 |
aatatatcatcctcgcttcgattagcatacacaacatgcaattcagttagatcttctgggtcttttagaattgcttgaaccacttggtaaattggtgtta |
32987286 |
T |
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| Q |
113 |
tcccacttccaccggccaacatggctagtctctttgcaaatttgtgcttaccgtgaaccataaagtttcctctaccagcatactctatgtgtcctaatgg |
212 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32987287 |
tcccacttccaccggccaacatagctagtctctttgcaaatttgtgcttaccgtgaaccataaagtttcctctaccagcatactctatgtgtcctaatgg |
32987386 |
T |
|
| Q |
213 |
accttttatatccaaggttgagccaataggcattgaatccaagtgttgagacatcaggccaccattagggaactttggatgcaccccttttaagtaaatc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32987387 |
accttttatatccaaggttgagccaataggcattgaatccaagtgttgagacattaggccaccattagggaactttggatgcaccccttttaagtaaatc |
32987486 |
T |
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| Q |
313 |
ttaatcactagatcaaaatgtccctttt |
340 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
32987487 |
ttaaccactagatcaaaatgtccctttt |
32987514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 13 - 340
Target Start/End: Original strand, 32957823 - 32958150
Alignment:
| Q |
13 |
aatatatcatcctcgcttcgattagcatacacaacatgcaattcagttagatcttctgggtcttttagaattgcttgaaccacttggtaaattggtgtta |
112 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||| | | ||||||||||| ||||| |||||||||||||| ||||||| |
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| T |
32957823 |
aatatatcatcctcgcttcgattagcatacacaacatatatttcagttagatccttcagatcttttagaatcgcttgtaccacttggtaaatcggtgtta |
32957922 |
T |
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| Q |
113 |
tcccacttccaccggccaacatggctagtctctttgcaaatttgtgcttaccgtgaaccataaagtttcctctaccagcatactctatgtgtcctaatgg |
212 |
Q |
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|||| |||| ||||||||||| |||| ||||||||||| ||||| ||||| ||||| | ||| |||||||||||| || ||||||||||| ||||| |
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| T |
32957923 |
tccccgttcctccggccaacatagctaacctctttgcaaacttgtgtttaccatgaacaagaaaatttcctctaccaatgtattctatgtgtcccaatgg |
32958022 |
T |
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| Q |
213 |
accttttatatccaaggttgagccaataggcattgaatccaagtgttgagacatcaggccaccattagggaactttggatgcaccccttttaagtaaatc |
312 |
Q |
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||| ||||||||||| | || |||||||||| |||||| |||||||||||||| ||||||||| ||||||| |||||||| || ||||| || |||||| |
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| T |
32958023 |
accctttatatccaaaatagaaccaataggcaatgaatctaagtgttgagacattaggccaccactagggaattttggatgaacacctttgaaataaatc |
32958122 |
T |
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| Q |
313 |
ttaatcactagatcaaaatgtccctttt |
340 |
Q |
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|||| || ||||||||||| |||||||| |
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| T |
32958123 |
ttaaccaatagatcaaaatatccctttt |
32958150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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