View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20018_high_3 (Length: 280)

Name: NF20018_high_3
Description: NF20018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20018_high_3
NF20018_high_3
[»] chr5 (21 HSPs)
chr5 (2-262)||(36445504-36445764)
chr5 (2-262)||(36435604-36435843)
chr5 (1-222)||(36467989-36468198)
chr5 (43-117)||(36492969-36493043)
chr5 (71-214)||(36476061-36476189)
chr5 (123-216)||(36435980-36436073)
chr5 (132-213)||(36435962-36436043)
chr5 (123-241)||(36435838-36435953)
chr5 (108-216)||(36445823-36445925)
chr5 (108-201)||(36435953-36436049)
chr5 (71-111)||(36493164-36493204)
chr5 (71-105)||(36436115-36436149)
chr5 (71-105)||(36445955-36445989)
chr5 (174-216)||(36468229-36468271)
chr5 (71-105)||(36468358-36468392)
chr5 (110-202)||(36475995-36476084)
chr5 (1-34)||(36445759-36445792)
chr5 (108-201)||(36445817-36445910)
chr5 (153-201)||(36468223-36468271)
chr5 (180-216)||(36475909-36475945)
chr5 (108-160)||(36475995-36476047)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 2 - 262
Target Start/End: Complemental strand, 36445764 - 36445504
Alignment:
Q  2 ggtggttacaatggtggaggaggtcacggtggtcacggtgctgctgaatctgttgccgtgcaaactgaggaaaagactaatgaagtaaatgatgccaaat 101  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36445764 ggtggttacaatggtggaggaggtcatggtggtcacggtgctgctgaatctgttgccgtgcaaactgaggaaaagactaatgaagtaaatgatgccaaat 36445665  T
Q  102 atggtcgtggtggttacaaccatggtggaagttacaaccatggtggaggtagttacaacaatggaggaggtagttaccaccacggtggaggtggttacaa 201  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36445664 atggtggtggtagttacaaccatggtggaagttacaaccatggtggaggtagttacaaccatggaggaggtagttaccaccacggtggaggtggttacaa 36445565  T
Q  202 ccacggtggaggtggacacggaggacacggtggaggtggtcacggtggtcacggtgccgag 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36445564 ccacggtggaggtggacacggaggacacggtggaggtggtcacggtggtcacggtgccgag 36445504  T

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Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 2 - 262
Target Start/End: Complemental strand, 36435843 - 36435604
Alignment:
Q  2 ggtggttacaatggtggaggaggtcacggtggtcacggtgctgctgaatctgttgccgtgcaaactgaggaaaagactaatgaagtaaatgatgccaaat 101  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36435843 ggtggttacaatggtggaggaggtcacggtggtcatggtgctgctgaatctgttgccgtgcaaactgaggaaaagactaatgaagtaaatgatgccaaat 36435744  T
Q  102 atggtcgtggtggttacaaccatggtggaagttacaaccatggtggaggtagttacaacaatggaggaggtagttaccaccacggtggaggtggttacaa 201  Q
    |||   ||||||||||||||                  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36435743 atg---gtggtggttacaac------------------catggtggaggtagttacaaccatggaggaggtagttaccaccacggtggaggtggttacaa 36435665  T
Q  202 ccacggtggaggtggacacggaggacacggtggaggtggtcacggtggtcacggtgccgag 262  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  36435664 ccacggtggaggtggacacgggggacatggtggaggtggtcacggtggtcacggtgccgag 36435604  T

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Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36468198 - 36467989
Alignment:
Q  1 cggtggttacaatggtggaggaggtcacggtggtcacggtgctgctgaatctgttgccgtgcaaactgaggaaaagactaatgaagtaaatgatgccaaa 100  Q
    ||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36468198 cggtggttacaatcgtggaggaggtcatggtggtcgcggtgctgctgaatctgttgccgtgcaaactgaggaaaagactaatgaagtaaatgatgccaga 36468099  T
Q  101 tatggtcgtggtggttacaaccatggtggaagttacaaccatggtggaggtagttacaacaatggaggaggtagttaccaccacggtggaggtggttaca 200  Q
     ||||| ||||             ||||| |||| |||| | ||||||| |||||||||| ||||| |||||||||||||||||||| ||||||||||||    
T  36468098 aatggtggtgg------------aggtggtagtttcaacaaaggtggagctagttacaaccatggacgaggtagttaccaccacggttgaggtggttaca 36468011  T
Q  201 accacggtggaggtggacacgg 222  Q
    |||| |||||||||||||||||    
T  36468010 accatggtggaggtggacacgg 36467989  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 36493043 - 36492969
Alignment:
Q  43 tgctgaatctgttgccgtgcaaactgaggaaaagactaatgaagtaaatgatgccaaatatggtcgtggtggtta 117  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36493043 tgctgaatttgttgccgtccaaactgaggaaaagactaatgaagtaaatgatgccaaatatggtggtggtggtta 36492969  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 36476189 - 36476061
Alignment:
Q  71 gaaaagactaatgaagtaaatgatgccaaatatggtcgtggtggttacaaccatggtggaagttacaaccatggtggaggtagttacaacaatggaggag 170  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||   |||||||| |||||||||| ||||| |||       ||||||||||||    
T  36476189 gaaaagactaatgaagtaaatgatgccaaatatg---gtggtggttaca---atggtggaggttacaaccacggtggtggt------tacaatggaggag 36476102  T
Q  171 gtagttaccaccacggtggaggtggttacaaccacggtggaggt 214  Q
       ||||| |||||||||| ||||| |||||| | |||||||||    
T  36476101 ---gttacaaccacggtgggggtggatacaacaatggtggaggt 36476061  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 36436073 - 36435980
Alignment:
Q  123 atggtggaagttacaaccatggtggaggtagttacaacaatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggaggtgg 216  Q
    |||||||| |||| ||||| || || ||| |||||||||| || |||||| ||||| |||| ||||| |||||||||||| |||||||||||||    
T  36436073 atggtggaggttataaccacggcggtggtggttacaacaacggtggaggtggttacaaccatggtggtggtggttacaacaacggtggaggtgg 36435980  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 36436043 - 36435962
Alignment:
Q  132 gttacaaccatggtggaggtagttacaacaatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggagg 213  Q
    |||||||| | ||||||||| |||||||| |||| || ||| ||||| || ||||||||||||| |||||||| ||||||||    
T  36436043 gttacaacaacggtggaggtggttacaaccatggtggtggtggttacaacaacggtggaggtggctacaaccatggtggagg 36435962  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 241
Target Start/End: Complemental strand, 36435953 - 36435838
Alignment:
Q  123 atggtggaagttacaaccatggtggaggtagttacaacaatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggaggtggacacgg 222  Q
    |||||||  |||||||||| || |||||| |||||||| | || |||||| ||||| |||| || |||||||||||||   | ||||| || || |||||    
T  36435953 atggtggtggttacaaccacggcggaggtggttacaaccacggtggaggtggttacaaccatggcggaggtggttaca---atggtggtggaggccacgg 36435857  T
Q  223 aggacacggtggaggtggt 241  Q
    ||| |||||||||||||||    
T  36435856 aggtcacggtggaggtggt 36435838  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 216
Target Start/End: Complemental strand, 36445925 - 36445823
Alignment:
Q  108 gtggtggttacaaccatggtggaagttacaaccatggtggaggtagttacaacaatggaggaggtagttaccaccacggtggaggtggttacaaccacgg 207  Q
    |||||||||||||   ||||||| |||| ||||| ||||| |||   ||| |||| || || ||| |||||||| |||||||||||||||||||||| ||    
T  36445925 gtggtggttacaa---tggtggaggttataaccacggtggtggt---taccacaacggtggtggtggttaccacaacggtggaggtggttacaaccatgg 36445832  T
Q  208 tggaggtgg 216  Q
    |||||||||    
T  36445831 tggaggtgg 36445823  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 36436049 - 36435953
Alignment:
Q  108 gtggtggttacaaccatggtggaagt---tacaaccatggtggaggtagttacaacaatggaggaggtagttaccaccacggtggaggtggttacaa 201  Q
    |||||||||||||| | |||||| ||   |||||||||||||| ||| |||||||||| || |||||| | ||| |||| |||||||| ||||||||    
T  36436049 gtggtggttacaacaacggtggaggtggttacaaccatggtggtggtggttacaacaacggtggaggtggctacaaccatggtggaggaggttacaa 36435953  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 36493204 - 36493164
Alignment:
Q  71 gaaaagactaatgaagtaaatgatgccaaatatggtcgtgg 111  Q
    |||||||||||||||||||| ||||||||||||||| ||||    
T  36493204 gaaaagactaatgaagtaaacgatgccaaatatggtggtgg 36493164  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 36436149 - 36436115
Alignment:
Q  71 gaaaagactaatgaagtaaatgatgccaaatatgg 105  Q
    |||||||||||||||||||| ||||||||||||||    
T  36436149 gaaaagactaatgaagtaaacgatgccaaatatgg 36436115  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 36445989 - 36445955
Alignment:
Q  71 gaaaagactaatgaagtaaatgatgccaaatatgg 105  Q
    |||||||||||||||||||| ||||||||||||||    
T  36445989 gaaaagactaatgaagtaaacgatgccaaatatgg 36445955  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 36468271 - 36468229
Alignment:
Q  174 gttaccaccacggtggaggtggttacaaccacggtggaggtgg 216  Q
    |||||||| ||||||||||||||||| || |||||||||||||    
T  36468271 gttaccacaacggtggaggtggttaccacaacggtggaggtgg 36468229  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 36468392 - 36468358
Alignment:
Q  71 gaaaagactaatgaagtaaatgatgccaaatatgg 105  Q
    |||||||||||||||||||| ||||||||||||||    
T  36468392 gaaaagactaatgaagtaaacgatgccaaatatgg 36468358  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 202
Target Start/End: Complemental strand, 36476084 - 36475995
Alignment:
Q  110 ggtggttacaaccatggtggaagttacaaccatggtggaggtagttacaacaatggaggaggtagttaccaccacggtggaggtggttacaac 202  Q
    ||||| |||||| |||||||| |||||||||| ||||| ||| | ||||||||||| || ||    ||| |||| ||||||||||||||||||    
T  36476084 ggtggatacaacaatggtggaggttacaaccacggtggtggtggatacaacaatggtggtgga---tacaaccatggtggaggtggttacaac 36475995  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 36445792 - 36445759
Alignment:
Q  1 cggtggttacaatggtggaggaggtcacggtggt 34  Q
    ||||||||||||||||||||||||||| ||||||    
T  36445792 cggtggttacaatggtggaggaggtcatggtggt 36445759  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 36445910 - 36445817
Alignment:
Q  108 gtggtggttacaaccatggtggaagttacaaccatggtggaggtagttacaacaatggaggaggtagttaccaccacggtggaggtggttacaa 201  Q
    |||| ||||| ||||| |||||  ||||| || | ||||| ||| ||||| |||| || |||||| ||||| |||| |||||||||||||||||    
T  36445910 gtggaggttataaccacggtggtggttaccacaacggtggtggtggttaccacaacggtggaggtggttacaaccatggtggaggtggttacaa 36445817  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 36468271 - 36468223
Alignment:
Q  153 gttacaacaatggaggaggtagttaccaccacggtggaggtggttacaa 201  Q
    ||||| |||| || |||||| |||||||| |||||||||||||||||||    
T  36468271 gttaccacaacggtggaggtggttaccacaacggtggaggtggttacaa 36468223  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 36475945 - 36475909
Alignment:
Q  180 accacggtggaggtggttacaaccacggtggaggtgg 216  Q
    |||| |||||||| |||||||||||||||||||||||    
T  36475945 accatggtggaggcggttacaaccacggtggaggtgg 36475909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 36476047 - 36475995
Alignment:
Q  108 gtggtggttacaaccatggtggaagttacaaccatggtggaggtagttacaac 160  Q
    ||||||| |||||| |||||||  | |||||||||||||||||| ||||||||    
T  36476047 gtggtggatacaacaatggtggtggatacaaccatggtggaggtggttacaac 36475995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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