View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20018_low_4 (Length: 251)
Name: NF20018_low_4
Description: NF20018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20018_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 783888 - 783666
Alignment:
| Q |
9 |
gaagaatatatctatacaagaaaaaccaatttaaaaagacatttcttgacaaattttaatatctgtaatagtattctaagtgattagttaccaagatttg |
108 |
Q |
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| T |
783888 |
gaagcatatatctatacaagaaaaaccaatttaaa--gacatttcttggcaaattttaatatctgtaatagtattctaagtgattagttaccaagatttg |
783791 |
T |
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| Q |
109 |
atcataaagtaacctcaaaaagaacatactcctaatattgagatccaacccctcacccaac---nnnnnnnnnnnnnncttgatggatgagttggttatt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
783790 |
atcataaagtaacctcaaaaagaacatactcctaatattgagatccaacccctcacccaacaaaaaaagaaaaaaaaacttgatggatgagttggttatt |
783691 |
T |
|
| Q |
206 |
ttatttctgaagtatttacttttcc |
230 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
783690 |
ttatttctgaagtatttacttttcc |
783666 |
T |
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