View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20018_low_6 (Length: 202)
Name: NF20018_low_6
Description: NF20018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20018_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 39417905 - 39418073
Alignment:
| Q |
19 |
cataatctgaccgtttatctggaaacctatcatgctgatctggtcctccgacaacagcacccactagaatgttgggattaggagattgtgaactcatcac |
118 |
Q |
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| T |
39417905 |
cataatctgaccgtttatctggaaacctatcatgctgatctggtcctccgacaacagcacccactagaatgttgggattaggagattgtgaactcatcac |
39418004 |
T |
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| Q |
119 |
actgaaacctgctgaacactggatctttcctgggtgtacagccattgaaggaagagatgatcctctgtg |
187 |
Q |
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| T |
39418005 |
actgaaacctgctgaacactggatctttcctgggtgtacagccattgaaggaagagatgatcctctgtg |
39418073 |
T |
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Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 44513579 - 44513417
Alignment:
| Q |
19 |
cataatctgaccgtttatctggaaacctatcatgctgatctggtcctccgacaacagcacccactagaatgttgggattaggagattgtgaactcatcac |
118 |
Q |
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|||||||||| |||| ||||||||| ||||||||| ||| ||||| || ||||| | |||||||||||||||||| ||||| |||||||| ||| || |
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| T |
44513579 |
cataatctgaacgttcatctggaaagctatcatgcaaatcaggtcccccaacaactgtacccactagaatgttggggttaggggattgtgagtccattac |
44513480 |
T |
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| Q |
119 |
actgaaacctgctgaacactggatctttcctgggtgtacagccattgaaggaagagatgatcc |
181 |
Q |
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| T |
44513479 |
actgaatccttctgaacattggatcttgccagggtgaacagcaatagatggaagtgatgatcc |
44513417 |
T |
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