View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20019_high_1 (Length: 697)
Name: NF20019_high_1
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20019_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 647; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 17 - 679
Target Start/End: Complemental strand, 53802488 - 53801826
Alignment:
| Q |
17 |
aattatgactcatcgttccacaggtaatcatagattatagattaaggctgggtagctccttataatgagaggagcaccgccccatataatacctattatt |
116 |
Q |
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| T |
53802488 |
aattatgactcatcgttccacaggtaatcatagattatagattaaggctgggtagctccttataatgagaggagcaccgccccatataatacctattatt |
53802389 |
T |
|
| Q |
117 |
atatatagtccacttaatttttctacatttgttacattttcatcatataagggatacggagaagatgccaaattcccacctcaaaaagcttttgtttgaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53802388 |
atatatagtccacttaatttttctacatttgttaaattttcatcatataagggatacggagaagatgccaaattcccacctcaaaaagcttttgtttgaa |
53802289 |
T |
|
| Q |
217 |
taaacacaaggcatcttgatctttactttaaactttttgattactttggaatccttaaagtgttactaactatagaaaatcccacttagatgaagccaga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53802288 |
taaacacaaggcatcttgatctttactttaaactttttgattactttggaatccttaaagtgttactaactatagaaaatcccacttagatgaagccaga |
53802189 |
T |
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| Q |
317 |
tgagaagttactttttctccactaactaatggtgatgaaattttgttcatgctcaaacactttactttactaatcaatactttacacacaagcttttagc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53802188 |
tgagaagttactttttctccactaactaatggtgatgaaattttgttcatgctcaaacactttactttactaatcaatactttacacacaagcttttagc |
53802089 |
T |
|
| Q |
417 |
tatctttctagcacaaatcaacaaaagctcttctctgacgtgaaaatgagtcacccggttatacattgaaaaggaaacatgctttgcatacgtaatatcc |
516 |
Q |
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| T |
53802088 |
tatctttctagcacaaatcaacaaaagctcttctctgacgtgaaaatgagtcacccggttatacattgaaaagggagcatgctttgcatacgtaatatcc |
53801989 |
T |
|
| Q |
517 |
tttaaccataccacctaatcctttcaattcaagttgtagtaaataacttaagattcttgcaagcttcaaaagccatgtttttaaaaatgtgctcattaaa |
616 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
53801988 |
tttaaccataccacctaatcctttcaattcaagttgtagtaaataacttaagattcttgtaagcttcaaaagccatgtttttaaaaatgtgctcattaaa |
53801889 |
T |
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| Q |
617 |
gttgtgacaaaaatcttttagacacccattccttcaagggacccacaccagttctttcagaga |
679 |
Q |
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| T |
53801888 |
gttgtgacaaaaatcttttagacacccattccttcaagggacccacaccagttctttcagaga |
53801826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 118 - 382
Target Start/End: Complemental strand, 41781533 - 41781270
Alignment:
| Q |
118 |
tatatagtccacttaatttttctacatttgttacattttcatcatataagggatacggagaagatgccaaattcccacctcaaaaagcttttgtttgaat |
217 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41781533 |
tatatagtccacttaacttctctacatttgttacattttcatcatataagggatacggagaagatgccaaattcccacctcaaaaagcttttgtatgaat |
41781434 |
T |
|
| Q |
218 |
aaacacaaggcatcttgatctttactttaaactttttgattactttggaatccttaaagtgttactaactatagaaaatcccacttagatgaagccagat |
317 |
Q |
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| T |
41781433 |
aaagacaaggcatcttgatctttgctttaaactttttgattac-ttggaatccttaaagtgttactaactatataaaatcccacttagatgaagccagat |
41781335 |
T |
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| Q |
318 |
gagaagttactttttctccactaactaatggtgatgaaattttgttcatgctcaaacactttact |
382 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41781334 |
gaaaagttactttttctccactaactaatggtgatgaaattttgttcatgctcaaacactttact |
41781270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 397 - 525
Target Start/End: Complemental strand, 41780558 - 41780430
Alignment:
| Q |
397 |
tttacacacaagcttttagctatctttctagcacaaatcaacaaaagctcttctctgacgtgaaaatgagtcacccggttatacattgaaaaggaaacat |
496 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||| |
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| T |
41780558 |
tttacacacaagcttttaactagctttctagcacaaatcaacaaaagctcttctctgacgtgaaaatgagtcacccggttagatattgaaaaggaagcat |
41780459 |
T |
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| Q |
497 |
gctttgcatacgtaatatcctttaaccat |
525 |
Q |
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| T |
41780458 |
gctttgcatacgtaatatcctttaaccat |
41780430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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