View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20019_high_11 (Length: 414)
Name: NF20019_high_11
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20019_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 7305984 - 7306378
Alignment:
| Q |
1 |
aaataacacttaccggtgatcctcaaattgtaatactccgggacatgacaaaaatgagctgattatgtacacagatttggatgtttttaacaacaatttt |
100 |
Q |
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| T |
7305984 |
aaataacacttaccggtgatcctcaaattgtaatactccgggacatgacaaaaatgagctgattatgtacacagatttggatgtttttaacaacaatttt |
7306083 |
T |
|
| Q |
101 |
gaaaactagtttggcagatgaatttgaacaaagtaaatgaataaaacaacaatttgacataagaaaaaataatacaaatttggcggtctgttctcactct |
200 |
Q |
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| T |
7306084 |
gaaaactagtttggcagatgaatttgaacaaagtaaatgaataaaacaacaatttgacataagaaaa--taatacaaatttggcggtctgttctcactct |
7306181 |
T |
|
| Q |
201 |
tttggtttggaatccaaaccatgcataccgcttaattcattcaccgccaatttatttacagctacgactcgctatttttaattaaacagaaaactcaact |
300 |
Q |
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| T |
7306182 |
tttggtttggaatccaaaccatgcataccgcttaattcattcaccgccaatttatttacagctacgactcgctatttttaattaaacagaaaactcaact |
7306281 |
T |
|
| Q |
301 |
gaatgatttggttgtatagaggagaggatagaaaatttattaagccgacttgactatatgatattattttctttctaaactgtttgatgcattgatt |
397 |
Q |
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| T |
7306282 |
gaatgatttggttgtatagaggagaggatagaaaatttattaagccgacttgactatatgatattattttctttctaaactgtttgatgcattgatt |
7306378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 7296924 - 7297030
Alignment:
| Q |
48 |
acaaaaatgagctgattatgtacacagatttggatgtttttaacaacaattttgaaaactagtttggcagatgaatttgaacaaagtaaatgaataaaac |
147 |
Q |
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|||||||| |||||| |||| | ||||||||||||||| ||||| |||||||||||||||| |||| |||||||||||||||||||||| |||||| |
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| T |
7296924 |
acaaaaattagctgactatggaaacagatttggatgttcttaactctaattttgaaaactagtctggcttatgaatttgaacaaagtaaatgtgtaaaac |
7297023 |
T |
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| Q |
148 |
aacaatt |
154 |
Q |
| |
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|| |||| |
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| T |
7297024 |
aagaatt |
7297030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 789020 - 788976
Alignment:
| Q |
221 |
atgcataccgcttaattcattcaccgccaatttatttacagctac |
265 |
Q |
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||||||||| ||||||||||||| | || |||||||||||||||| |
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| T |
789020 |
atgcataccacttaattcattcaacacctatttatttacagctac |
788976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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