View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20019_high_14 (Length: 403)
Name: NF20019_high_14
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20019_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 43108141 - 43107764
Alignment:
| Q |
1 |
gaatttaggtcctttaaacatgtgatcatgagttcgatctttaacttttatgtatggagaaaatctaattggaagaggagaacttacattgtatatccac |
100 |
Q |
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| T |
43108141 |
gaatttaggtcctttaaacatgtgatcatgagttcgatctttaacttttacgtatgaagaaaatctggttggaagaggagaacttacattgtatatccac |
43108042 |
T |
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| Q |
101 |
aaattttaaaatgaatattaatcactactaaataatggggaaaatttcatatcaataccatggtnnnnnnnnnttagaattgattggaagcacttggagt |
200 |
Q |
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| T |
43108041 |
aaatttttaaatgaatattaatcactactaaataatggggaaaatttcatatcaataccatggtaaaaaaaaattagaattgattggaagcacttggagt |
43107942 |
T |
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| Q |
201 |
tgacctaagctttgaataatttatatacttgaataatctcaacaagttcacaattgcaagtggaggtctacttaatcatcatataagcaagnnnnnnngc |
300 |
Q |
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| T |
43107941 |
tgacctaagctttgaataatttatatacttgaataatctcaacaagttcacaattgcaagtggaggtctacttagtcatcatataagcaagtttttttgc |
43107842 |
T |
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| Q |
301 |
aatgcaccattctcatcttagcacatcacatcacatagttcacataatcaaaacacatgaacataattcaccgattcacgttc |
383 |
Q |
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| T |
43107841 |
gatgctccattcacatcttag-----cacatcacatagttcacataatcaaaacacatgaacataattcaccgattcacgttc |
43107764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 19246371 - 19246308
Alignment:
| Q |
14 |
ttaaacatgtgatcatgagttcgatctttaacttttatgtatggagaaaatctaattggaagag |
77 |
Q |
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| T |
19246371 |
ttaaacaagtgatcatgagttcaatctcttacttttgtgtatcgagaaaatctatttgggagag |
19246308 |
T |
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