View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20019_high_28 (Length: 204)
Name: NF20019_high_28
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20019_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 6e-76; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 2 - 185
Target Start/End: Original strand, 3777751 - 3777934
Alignment:
| Q |
2 |
tctcattaaatcttaccttcaaaccaactccgagtccctctagcaaaatagcattcattctttgttcggaaaacaatggccaagttatcactggcactcc |
101 |
Q |
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| T |
3777751 |
tctcattaaatcttaccttcaaaccaactccgagtccctctaacaacatagcattcattctttgctctgaaaacaatggccaagttatcattggcactcc |
3777850 |
T |
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| Q |
102 |
gaacacaagactctcaagtgtctaattccaaccacaatgtgttaaaaatccaccggttgaagcgtggcttacgatttgagtctg |
185 |
Q |
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| T |
3777851 |
gaacacaagactctccagtgtcgaattccaaccacaatgtgttaaaaatccaccggttgaaatgtggcttaggatttgagtctg |
3777934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 3701348 - 3701183
Alignment:
| Q |
1 |
ttctcattaaatcttaccttcaaaccaactccgagtccctct---agcaaaatagcattcattctttgttcggaaaacaatggccaagttatcactggca |
97 |
Q |
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| T |
3701348 |
ttctcattaaatttgatcttcaaacccactttgagtccctctgtcaacaaaacagcattcattctttgctcgccaaataatggccatgttatcattggca |
3701249 |
T |
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| Q |
98 |
ctccgaacacaagactctcaagtgtctaattccaaccacaatgtgttaaaaatccaccggttgaag |
163 |
Q |
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| T |
3701248 |
ctcctaacacgatactctcaagtgtcgaattccaaccacaatgtgttaaaaatccaccggttgaag |
3701183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 3719624 - 3719459
Alignment:
| Q |
1 |
ttctcattaaatcttaccttcaaaccaactccgagtccctctagca---aaatagcattcattctttgttcggaaaacaatggccaagttatcactggca |
97 |
Q |
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| T |
3719624 |
ttctcattaaattttatcttcaaacccactttaagtccctctactattaaaatagcattcattctttgatcaccaaacaatggccaagttatcattggca |
3719525 |
T |
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| Q |
98 |
ctccgaacacaagactctcaagtgtctaattccaaccacaatgtgttaaaaatccaccggttgaag |
163 |
Q |
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| T |
3719524 |
ctccggacacaatactctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaag |
3719459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 3708115 - 3707951
Alignment:
| Q |
1 |
ttctcattaaatcttaccttcaaaccaactccgagtccctctagca---aaatagcattcattctttgttcggaaaacaatggccaagttatcactggca |
97 |
Q |
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| T |
3708115 |
ttctcattaaattttatcttcaaacccactttaagtccctctactattaaaatagcattcattatttgatcaccaaacaatggccaagttatcattggca |
3708016 |
T |
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| Q |
98 |
ctccgaacacaagactctcaagtgtctaattccaaccacaatgtgttaaaaatccaccggttgaa |
162 |
Q |
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| T |
3708015 |
ctccggacacaatactctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaa |
3707951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 45 - 187
Target Start/End: Original strand, 33005039 - 33005181
Alignment:
| Q |
45 |
caaaatagcattcattctttgttcggaaaacaatggccaagttatcactggcactccgaacacaagactctcaagtgtctaattccaaccacaatgtgtt |
144 |
Q |
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|||||||||||||| |||||| ||| |||||| ||||||||||||| ||||||||| || ||| ||||| ||||| |||||||||||||||||||| |
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| T |
33005039 |
caaaatagcattcaatctttgctcgccaaacaacggccaagttatcattggcactcccgacgcaatgctctcgagtgttgaattccaaccacaatgtgtt |
33005138 |
T |
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| Q |
145 |
aaaaatccaccggttgaagcgtggcttacgatttgagtctgtg |
187 |
Q |
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| T |
33005139 |
aaaaatccaccagttgaagtgtggcttaggatttgagtctgtg |
33005181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 3770080 - 3770244
Alignment:
| Q |
1 |
ttctcattaaatcttaccttcaaaccaactccgagtccctctagca---aaatagcattcattctttgttcggaaaacaatggccaagttatcactggca |
97 |
Q |
| |
|
|||||||||||| ||| ||||||||| ||| |||||||||| | ||||||||||||||||||| || ||||||||||||||||| || ||||| |
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| T |
3770080 |
ttctcattaaattttatcttcaaacccactttaagtccctctactattaaaatagcattcattctttgatcaccaaacaatggccaagttaccattggca |
3770179 |
T |
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| Q |
98 |
ctccgaacacaagactctcaagtgtctaattccaaccacaatgtgttaaaaatccaccggttgaa |
162 |
Q |
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|||| |||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
3770180 |
ctcccgacacaatactctcaagtgttgaattccaaccacaatgtgttaaaaatccacctgttgaa |
3770244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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