View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20019_high_9 (Length: 453)
Name: NF20019_high_9
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20019_high_9 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 25221258 - 25221695
Alignment:
| Q |
1 |
ctaatatctctatagattggtgggttctcttctgagatcaattctttaataggaccataaatcattgatgaagctttatcaagatcatgagaagttccaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25221258 |
ctaatatctctatagattggtgggttctcttctgagaccaattctttaataggaccataaatcattgatgaagctttatcaagatcatgagaagttccaa |
25221357 |
T |
|
| Q |
101 |
agaaggcagctacagaaactcttgggcctttatgatttgatagtacccgatgataaacactactgaaattgtcatttgacacaagctgcacgattaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25221358 |
agaaggcagctacagaaactcttgggcctttatgatttgatagtacccgatgataaacactactgaaattgtcatttgacacaagctgcacgattaacaa |
25221457 |
T |
|
| Q |
201 |
ataaattgatataagtatatagtcgttacaatgatatctaattaactatgaagtatgatagtaatttcaattttctccaaaattcag-gnnnnnnnnaac |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
25221458 |
ataaattgatataagtatatagtcgttacaatgatatctaattaactatgaagtatgatagtaatttcaattttctccaaaattcagttttttttttaac |
25221557 |
T |
|
| Q |
300 |
cctctagctct--nnnnnnnnggggaacccggtatttcaaagtttggtcagaggtaagtaaagtttgactaaaaattgttccatcaagaatcaaggtgag |
397 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
25221558 |
cctctagctctaaaaaaaaaaggggaacccggtatttcaaagcttggtcagaggtaagtaaagtttgactaaaaactgttccatcaagaatcaaagtgag |
25221657 |
T |
|
| Q |
398 |
gttttgcgaaacaattcgtcattgatgaaactcgttaa |
435 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||| |
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|
| T |
25221658 |
attcttcgaaacaattcgtcattgatgaaactcgttaa |
25221695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 26173184 - 26172914
Alignment:
| Q |
5 |
tatctctatagattggtgggttctcttctgagatcaattctttaataggaccataaatcattgatgaagctttatcaagatcatgagaagttccaaagaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||| || |||||||||||| |||||||||| |
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|
| T |
26173184 |
tatctctatagattggtgggttctcttctgataacaattctttaataggaccataaatcgttgatgaagctttctccagatcatgagaatttccaaagaa |
26173085 |
T |
|
| Q |
105 |
ggcagctacagaaactcttgggcctttatgatttgatagtacccgatgataaacactactgaaattgtcatttgacacaagctg-cacgattaacaaata |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | |||||| | |||||||||||| |
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|
| T |
26173084 |
ggcagctacagaaactcttgggcctttatgatttgataacacccgatgataaacactactaaaattgtcatttgatataagctgtaaagattaacaaata |
26172985 |
T |
|
| Q |
204 |
aattgatataagtatatagtcgttacaatgatatctaattaactatgaagtatgatagtaatttcaatttt |
274 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | |||||||| |||| |
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|
| T |
26172984 |
aattgatataagtatatattcgttacaatgatatctaattaactatgaattatgacaataatttcattttt |
26172914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 435
Target Start/End: Complemental strand, 26172849 - 26172752
Alignment:
| Q |
338 |
agtttggtcagaggtaagtaaagtttgactaaaaattgttccatcaagaatcaaggtgaggttttgcgaaacaattcgtcattgatgaaactcgttaa |
435 |
Q |
| |
|
||||||||||||||||| | |||| |||||||||||||||| ||||| |||||| || || || | | ||| ||||| ||||||||||||||| |||| |
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|
| T |
26172849 |
agtttggtcagaggtaaatgaagtatgactaaaaattgttctatcaaaaatcaaagtcagattatccaaaataattcatcattgatgaaactcattaa |
26172752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 257
Target Start/End: Complemental strand, 26397731 - 26397484
Alignment:
| Q |
7 |
tctctatagattggtgggttctcttctgagatcaattctttaataggaccataaatcattgatgaagctttatcaagatcatgagaagttccaaagaagg |
106 |
Q |
| |
|
||||| ||||| |||||| | |||||||| | ||||| || |||||||| |||| | |||| |||| || ||| | ||||| | | |||||||||| |
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|
| T |
26397731 |
tctctgtagatcggtgggatttcttctgataacaatttctttataggaccgtaaacctttgacgaagattcatccaaatcataaagatttccaaagaaat |
26397632 |
T |
|
| Q |
107 |
cagctacagaaactcttgggcctttatgatttgatagtacccgatgataaacactactgaaattgtcatttgacacaagctgcacgattaacaaataaat |
206 |
Q |
| |
|
|||||||||||||||||| ||||||| | || ||| || |||||| ||||||| ||||||||||||| | |||||| | ||| |||||||||| |
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|
| T |
26397631 |
tagctacagaaactcttggtcctttatcacttaataacactcgatgaaaaacactgacaaaattgtcatttgttataagctgtaacattgacaaataaat |
26397532 |
T |
|
| Q |
207 |
tgatataagtatatagtcgttacaatgatatctaattaactatgaagtatg |
257 |
Q |
| |
|
| |||||||||||| ||||||||| ||||| ||||||||||||||| |
|
|
| T |
26397531 |
ttctataagtatata---attacaatgacatctacgtaactatgaagtatg |
26397484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 8353044 - 8352760
Alignment:
| Q |
1 |
ctaatatctctatagattggtgggttctcttctgagatcaattctttaataggaccataaatcattgatgaagctttatcaagatcatgagaagttccaa |
100 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||| |
|
|
| T |
8353044 |
ctaatatctgtatagattggggggttctcttctgagaacaaatctttaataggaccataaatctttgatgaagctttatctagatcatgggaagttccaa |
8352945 |
T |
|
| Q |
101 |
agaaggcagctacagaaactcttgggcctttatgatttgatagtacccgatgataaacactactgaaattgtcatttgacacaagctgcacgattaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
8352944 |
agaaggcagctacagaaactcttgggcctttatgatttgataacacacgatgataaacactactgaaattgtcatttgatacaagctgtatgattaacaa |
8352845 |
T |
|
| Q |
201 |
ataaattgatataagtatatagtcgttacaatgatatctaattaactatgaagtatgatagtaatttcaa-ttttctccaaaatt |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
8352844 |
ataaattgatataagtatatagtcgttacaatgttatctaattaactatgaagtctgacagtaatttcaatttttctccaaaatt |
8352760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 435
Target Start/End: Complemental strand, 8352710 - 8352603
Alignment:
| Q |
328 |
ggtatttcaaagtttggtcagaggtaagtaaagtttgactaaaaattgttccatcaagaatcaaggtgaggttttgcgaaacaattcgtcattgatgaaa |
427 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| | ||| |||||||||||||||||||| || || ||||| | ||||||||| ||||||| ||| |
|
|
| T |
8352710 |
ggtatttcagagtttggtcagaggtaaataaagtctaactgaaaattgttccatcaagaattaaagtcaggttctctgaaacaatttgtcattggagaag |
8352611 |
T |
|
| Q |
428 |
ctcgttaa |
435 |
Q |
| |
|
|||||||| |
|
|
| T |
8352610 |
ctcgttaa |
8352603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 41242399 - 41242340
Alignment:
| Q |
2 |
taatatctctatagattggtgggttctcttctgagatcaattctttaataggaccataaa |
61 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| | |||||| || || |||||||||| |
|
|
| T |
41242399 |
taatatctctatagattggagggttttcttctgataacaattcctttattggaccataaa |
41242340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 49463218 - 49463266
Alignment:
| Q |
13 |
tagattggtgggttctcttctgagatcaattctttaataggaccataaa |
61 |
Q |
| |
|
|||||||||||||| |||||||| | || ||| |||||||||||||||| |
|
|
| T |
49463218 |
tagattggtgggttttcttctgaaagcagttccttaataggaccataaa |
49463266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 28130780 - 28130721
Alignment:
| Q |
2 |
taatatctctatagattggtgggttctcttctgagatcaattctttaataggaccataaa |
61 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| | |||||| || || |||||||||| |
|
|
| T |
28130780 |
taatatctctatagattggagggttttcttctgataacaattcctttattggaccataaa |
28130721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 380
Target Start/End: Complemental strand, 5843673 - 5843640
Alignment:
| Q |
347 |
agaggtaagtaaagtttgactaaaaattgttcca |
380 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
5843673 |
agaggtaagtaaagtttgacaaaaaattgttcca |
5843640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 29464977 - 29464909
Alignment:
| Q |
2 |
taatatctctatagattggtgggttctcttctgagatcaattctttaataggaccataaatcattgatg |
70 |
Q |
| |
|
|||||||| | ||||||| ||||| |||||||| |||| || |||||||||||||||||| |||||| |
|
|
| T |
29464977 |
taatatctttgtagattgccgggttttcttctgaaatcagctccttaataggaccataaatctttgatg |
29464909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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