View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20019_low_10 (Length: 424)

Name: NF20019_low_10
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20019_low_10
NF20019_low_10
[»] chr5 (1 HSPs)
chr5 (1-408)||(20746280-20746687)
[»] chr6 (1 HSPs)
chr6 (4-273)||(26908996-26909267)
[»] chr7 (1 HSPs)
chr7 (90-273)||(23068145-23068326)
[»] chr2 (2 HSPs)
chr2 (90-273)||(25809089-25809270)
chr2 (292-378)||(25815489-25815575)
[»] scaffold0011 (1 HSPs)
scaffold0011 (90-273)||(135753-135934)


Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 20746280 - 20746687
Alignment:
Q  1 agtacccacatccttcttctctcatctcaccaccatttaaccaaataaccaccgccaccaccatcaaaccccacttttcagaaccccatatctcattgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  20746280 agtacccacatccttcttctctcatctcaccaccatttaacaaaataaccaccgccaccaccatcaaaccccaatttttagaaccccatatctcattgaa 20746379  T
Q  101 ctccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtataatgcaatttcttaatttctttgatttatttat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20746380 ctccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtataatgcaatttcttaatttctttgatttatttat 20746479  T
Q  201 ctcattgattttattaatcccaaaatctgagctgtttttcaatttcttgtaatacggttttgttctctatttaattgaaaacaatttcttgtgaattttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20746480 ctcattgattttattaatcccaaaatctgagctgtttttcaatttcttgtaatacggttttgttctctatttaattgaaaacaatttcttgtgaattttt 20746579  T
Q  301 gtgctggattgttttcaattgaatttttgaatctgcttggggtttgcctttcgcttccttcagctgttttctaacaggnnnnnnnnngtccatgcagttc 400  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||    
T  20746580 gtgctggattgttttcaattgaatttttgaatcggcttggggtttgcctttcgcttccttcagctgttttctaacaggtttttttttgtccatgcagttc 20746679  T
Q  401 ggtgttac 408  Q
    ||||||||    
T  20746680 ggtgttac 20746687  T

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Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 4 - 273
Target Start/End: Complemental strand, 26909267 - 26908996
Alignment:
Q  4 acccacatccttcttctctcatctcaccaccatttaaccaaataaccaccgccaccaccatcaaaccccacttttcagaaccccatatctc--attgaac 101  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||    
T  26909267 acccacatccttcttctctcatctcaccactatttaaccaaataaccaccgccaccaccatcaaaccccacttttcagaaccccgtatctctcattgaac 26909168  T
Q  102 tccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtataatgcaatttcttaatttctttgatttatttatc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26909167 tccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtataatgcaatttcttaatttctttgatttatttatc 26909068  T
Q  202 tcattgattttattaatcccaaaatctgagctgtttttcaatttcttgtaatacggttttgttctctattta 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  26909067 tcattgattttattaatcccaaaatctgagctgtttttcaatttcttgtgatacggttttgttctccattta 26908996  T

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Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 90 - 273
Target Start/End: Complemental strand, 23068326 - 23068145
Alignment:
Q  90 atctcattgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtataatgcaatttcttaatttcttt 189  Q
    |||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||  || |||||||||||||||||||||||  ||||| | |||||||||    
T  23068326 atctaattaaactccacttctcacaacccattgaaccc-atctctcatctcattacaagcatgcacccacacaggtataattgaatttttcaatttcttt 23068228  T
Q  190 gatttatttatctcattgattttattaatcccaaaatctgagctgtttttcaatttcttgtaatacggttttgttctctattta 273  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  23068227 gatttatttatttcat-gattttattaatcccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctattta 23068145  T

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Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 90 - 273
Target Start/End: Original strand, 25809089 - 25809270
Alignment:
Q  90 atctcattgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtataatgcaatttcttaatttcttt 189  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||  || |||||||||||||||||||||||  ||||| | |||||||||    
T  25809089 atctcattgaactccacttctcacaacccattgaaccc-atctctcatctcattacaagcatgcacccacacaggtataattgaatttttcaatttcttt 25809187  T
Q  190 gatttatttatctcattgattttattaatcccaaaatctgagctgtttttcaatttcttgtaatacggttttgttctctattta 273  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| ||||  |||||||| |||||||    
T  25809188 gatttatttatttcat-gattttattaatcccaaaatctgagctgtttgtcaatttcttgtgatactattttgttccctattta 25809270  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 292 - 378
Target Start/End: Original strand, 25815489 - 25815575
Alignment:
Q  292 tgaatttttgtgctggattgttttcaattgaatttttgaatctgcttggggtttgcctttcgcttccttcagctgttttctaacagg 378  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25815489 tgaatttttgtgatggattgttttcaattgaatttttgaatctgcttggggtttgcctttcgcttccttcagctgttttctaacagg 25815575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 90 - 273
Target Start/End: Original strand, 135753 - 135934
Alignment:
Q  90 atctcattgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtataatgcaatttcttaatttcttt 189  Q
    |||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||  || |||||||||||||||||||||||  ||||| | |||||||||    
T  135753 atctaattaaactccacttctcacaacccattgaaccc-atctctcatctcattacaagcatgcacccacacaggtataattgaatttttcaatttcttt 135851  T
Q  190 gatttatttatctcattgattttattaatcccaaaatctgagctgtttttcaatttcttgtaatacggttttgttctctattta 273  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||| ||||  ||||||||||||||||    
T  135852 gatttatttatttcat-gattttaataatcccaaaatctgagctgtttttcaattttttgtgatactattttgttctctattta 135934  T

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