View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20019_low_13 (Length: 403)
Name: NF20019_low_13
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20019_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 24985329 - 24985704
Alignment:
| Q |
19 |
attcaatggtgagtgtggtgagtgtaagtgttgcatgtgcaagaaaaccaacatgtgtgagaaatctggagtagacccaatgaagaagttaatgtgtgat |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24985329 |
attcaatggtgagtgtggtgagtgtaagtgctgcatgtgcaagaaaaccaacatgtgtgagaaatctggagtagacccaatgaagaagttaatgtgtgat |
24985428 |
T |
|
| Q |
119 |
ggaacaagtagattttcttcaatagatggcaaacccatttttcatttcttgaacacttcaactttcactgagtatacagtggtggattcagcttgtgctg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24985429 |
ggaacaagtagattttcttcaatagatggcaaacccatttttcatttcttgaatacttcaactttcactgagtatacagtggtggattcagcttgtgctg |
24985528 |
T |
|
| Q |
219 |
ttaagctcaacactgaagataaccttagtctcaaaaaactcaccttgcttagttgtggagtttccacaggtatgtttcctttataaccatggagtttttg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24985529 |
ttaagctcaacactgaagataaccttagtctcaaaaaactcaccttgcttagttgtggagtttccacaggtatgtttcctttataaccatggagtttttg |
24985628 |
T |
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| Q |
319 |
agaaaattttgtttaatttattcttattactatgtaaactttattgagtggagaagttgcgaaaacacatgatgat |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24985629 |
agaaaattttgtttaatttattcttattactatgtaaactttattgagtggagaagttgcgaaaacacatgatgat |
24985704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 24993248 - 24993519
Alignment:
| Q |
19 |
attcaatggtgagtgtggtgagtgtaagtgttgcatgtgcaagaaaaccaacatgtgtgagaaatctggagtagacccaatgaagaagttaatgtgtgat |
118 |
Q |
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|||||| || ||||||||||||||||| | |||| ||| |||||||||||||||||||||| | ||| ||| |||||||||||| ||||||||||| |
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| T |
24993248 |
attcaacggggagtgtggtgagtgtaactactgcaagtgtgagaaaaccaacatgtgtgagaagtatggtgtaaacccaatgaagagactaatgtgtgat |
24993347 |
T |
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| Q |
119 |
ggaacaagtagattttcttcaatagatggcaaacccatttttcatttcttgaacacttcaactttcactgagtatacagtggtggattcagcttgtgctg |
218 |
Q |
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|| ||||||||||| ||| ||||||||||||||| ||||| |||||||||||| ||||||||||||| ||||| |||||||| ||||||| ||||||| |
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| T |
24993348 |
ggtacaagtagattctctacaatagatggcaaactcatttaccatttcttgaactcttcaactttcacggagtacacagtggtcgattcaggttgtgctc |
24993447 |
T |
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| Q |
219 |
ttaagctcaacactgaagataaccttagtctcaaaaaactcaccttgcttagttgtggagtttccacaggta |
290 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24993448 |
ttaagctcaacactgaagacattcttagtctcaaaaaactcaccttgcttagttgtggagtttccacaggta |
24993519 |
T |
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